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IMGVR_UViG_3300005098_000446-3300005098-Ga0072683_10572943

Arc-Vir

IMGVR_UViG_3300005098_000446-3300005098-Ga0072683_10572943

Identity

Kingdom:
archaea

Quality

73.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-90
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 51.0 4.47e-01 81.4% 63.2%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 50.0 4.81e-01 96.5% 75.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 51.0 4.80e-01 97.7% 73.8%
3anpB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 42.0 3.33e-01 72.1% 84.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 43.0 4.47e-01 76.7% 98.7%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 50.0 4.78e-01 98.8% 83.0%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.59 48.0 3.50e-01 93.0% 42.5%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 31.0 3.37e-01 74.4% 60.8%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 43.0 3.88e-01 98.8% 58.0%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.99e-01 90.7% 89.4%
1bgcA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 41.0 3.41e-01 80.2% 70.9%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 41.0 3.51e-01 82.6% 86.9%
1jkwA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.45e-01 89.5% 44.3%
2iu1A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 40.0 3.24e-01 83.7% 61.8%
5lnkJ01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.52 39.0 3.11e-01 88.4% 39.6%
2q1zD01 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.52 36.0 3.60e-01 72.1% 71.6%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.50 38.0 3.83e-01 83.7% 86.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3314861 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.69 53.0 4.74e-01 82.6% 63.3%
3391978 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.66 36.0 3.82e-01 80.2% 60.0%
4945282 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 51.0 4.67e-01 97.7% 65.8%
3227569 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 49.0 4.07e-01 81.4% 49.3%
3247877 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 46.0 4.57e-01 90.7% 77.8%
3452232 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 3.20e-01 90.7% 29.3%
4998812 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 37.0 4.07e-01 80.2% 83.1%
5000182 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 49.0 4.68e-01 100.0% 79.0%
4970840 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 4.56e-01 94.2% 93.3%
4944669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.70e-01 100.0% 97.5%
3288147 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.56 38.0 3.67e-01 89.5% 60.0%
4993182 3290.1.1.1 ↗ alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto 0.56 43.0 4.15e-01 88.4% 72.0%
3757530 150.3.1.11 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › LIF_OSM 0.53 43.0 3.44e-01 90.7% 65.8%
3228529 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 46.0 3.87e-01 97.7% 58.7%
4944918 150.1.1.208 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › RUBY_RBDX 0.52 38.0 3.27e-01 79.1% 90.0%
3626229 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 43.0 4.32e-01 87.2% 89.4%
3932690 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.51 36.0 3.65e-01 97.7% 73.3%
3770218 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.51 38.0 3.65e-01 91.9% 68.9%
4947161 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.51 37.0 3.21e-01 79.1% 91.7%
3594525 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 45.0 4.31e-01 100.0% 86.0%
4954575 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 39.0 3.94e-01 97.7% 81.1%