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IMGVR_UViG_3300005099_000002-3300005099-Ga0072682_10056713
Arc-VirIMGVR_UViG_3300005099_000002-3300005099-Ga0072682_10056713
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 55-112
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.67 | 42.0 | 3.01e-01 | 93.1% | 19.9% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.65 | 52.0 | 4.59e-01 | 100.0% | 60.5% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 48.0 | 3.73e-01 | 98.3% | 35.8% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 45.0 | 4.00e-01 | 100.0% | 50.0% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.63 | 54.0 | 4.26e-01 | 100.0% | 53.4% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 43.0 | 3.99e-01 | 100.0% | 55.8% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.62 | 46.0 | 3.58e-01 | 91.4% | 35.9% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 40.0 | 3.56e-01 | 84.5% | 47.0% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.59 | 48.0 | 4.15e-01 | 98.3% | 57.4% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 40.0 | 3.60e-01 | 100.0% | 49.4% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 43.0 | 3.12e-01 | 91.4% | 27.8% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 49.0 | 3.18e-01 | 100.0% | 75.0% |
| 5uh0A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 50.0 | 3.78e-01 | 100.0% | 45.0% |
| 7oocE01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 42.0 | 3.77e-01 | 96.6% | 56.5% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 3.43e-01 | 91.4% | 41.7% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.56 | 42.0 | 3.32e-01 | 86.2% | 70.2% |
| 5jtwA06 | 6.20.50.160 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 33.0 | 3.32e-01 | 100.0% | 54.8% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 40.0 | 3.27e-01 | 100.0% | 35.6% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.56 | 46.0 | 3.47e-01 | 91.4% | 68.0% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 39.0 | 3.50e-01 | 100.0% | 49.4% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.56 | 43.0 | 2.57e-01 | 86.2% | 90.0% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 46.0 | 3.59e-01 | 100.0% | 53.6% |
| 2a74A06 | 6.20.50.160 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.54 | 33.0 | 3.29e-01 | 100.0% | 56.2% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.54 | 41.0 | 3.17e-01 | 96.6% | 33.3% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 39.0 | 3.11e-01 | 86.2% | 62.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 43.0 | 2.95e-01 | 100.0% | 53.1% |
| 4v19W00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.51 | 40.0 | 3.05e-01 | 94.8% | 78.9% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 46.0 | 3.51e-01 | 100.0% | 65.1% |
| 6lkvA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 42.0 | 3.21e-01 | 91.4% | 64.7% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.77e-01 | 94.8% | 80.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082037 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.66 | 51.0 | 4.27e-01 | 93.1% | 51.1% |
| 4063438 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.66 | 55.0 | 4.75e-01 | 98.3% | 59.1% |
| 4671096 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.66 | 58.0 | 4.38e-01 | 96.6% | 43.8% |
| 4469636 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.65 | 49.0 | 4.34e-01 | 91.4% | 52.9% |
| 3666982 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.65 | 52.0 | 4.53e-01 | 100.0% | 56.8% |
| 5073773 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.65 | 51.0 | 4.17e-01 | 100.0% | 44.2% |
| 3688597 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.65 | 44.0 | 3.13e-01 | 84.5% | 22.3% |
| 4422649 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.64 | 53.0 | 4.60e-01 | 98.3% | 58.5% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 49.0 | 4.12e-01 | 100.0% | 48.2% |
| 3904472 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.62 | 47.0 | 3.80e-01 | 94.8% | 42.7% |
| 3959610 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.62 | 47.0 | 3.74e-01 | 100.0% | 38.3% |
| 3301111 | 331.3.1.25 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO | 0.61 | 45.0 | 3.57e-01 | 100.0% | 35.6% |
| 3590193 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 43.0 | 3.95e-01 | 91.4% | 53.8% |
| 4996340 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.61 | 43.0 | 3.95e-01 | 100.0% | 55.0% |
| 3601299 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 49.0 | 3.94e-01 | 100.0% | 43.2% |
| 3269973 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.60 | 48.0 | 4.04e-01 | 96.6% | 52.6% |
| 3680527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 42.0 | 3.90e-01 | 100.0% | 57.3% |
| 3955267 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.60 | 45.0 | 3.61e-01 | 100.0% | 38.1% |
| 4976198 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.59 | 44.0 | 4.05e-01 | 100.0% | 58.8% |
| 3396071 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 41.0 | 3.82e-01 | 84.5% | 57.3% |
| 5037613 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 42.0 | 3.83e-01 | 98.3% | 55.7% |
| 4059028 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.58 | 48.0 | 2.91e-01 | 91.4% | 66.8% |
| 4213219 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.58 | 48.0 | 2.66e-01 | 91.4% | 33.8% |
| None | — | 0.58 | 48.0 | 2.66e-01 | 91.4% | 32.2% | |
| 3574232 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.57 | 47.0 | 3.03e-01 | 98.3% | 45.5% |
| 4993017 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.56 | 41.0 | 3.63e-01 | 100.0% | 50.5% |
| 3480583 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.56 | 37.0 | 3.69e-01 | 87.9% | 66.7% |
| 3467049 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.55 | 48.0 | 3.28e-01 | 96.6% | 30.3% |
| 3287711 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.54 | 47.0 | 3.10e-01 | 96.6% | 33.2% |
| 3517822 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.53 | 39.0 | 3.27e-01 | 100.0% | 42.6% |
| 2867998 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 39.0 | 3.40e-01 | 93.1% | 47.6% |
| 3823591 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 45.0 | 3.85e-01 | 100.0% | 69.0% |
| 3657148 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.53 | 36.0 | 3.48e-01 | 93.1% | 61.4% |
| 3779302 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.52 | 42.0 | 2.74e-01 | 93.1% | 43.8% |
| 3608292 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.52 | 40.0 | 3.68e-01 | 98.3% | 63.7% |
| 5072826 | 878.1.1.0 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 | 0.52 | 40.0 | 3.54e-01 | 100.0% | 57.3% |
| 3412051 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.51 | 40.0 | 2.66e-01 | 93.1% | 18.6% |
| 3704272 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.51 | 41.0 | 2.63e-01 | 93.1% | 76.7% |
| 3714845 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.42e-01 | 98.3% | 56.0% |
| 3838701 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.51 | 41.0 | 2.48e-01 | 91.4% | 52.2% |