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IMGVR_UViG_3300005099_000002-3300005099-Ga0072682_10056723

Arc-Vir

IMGVR_UViG_3300005099_000002-3300005099-Ga0072682_10056723

Identity

Kingdom:
archaea

Quality

71.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-15_23-164
PDB
Domain cluster: rep: OL597546.1__UUB23297.1__X__00001__D24-147
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04586.23 best Peptidase_S78 75.0 1.10e-20 96.7% 88.5%
PF14550.12 Peptidase_S78_2 32.0 1.70e-07 72.9% 89.0%
D2 medium residues 192-262
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d6fC03 1.10.150.380 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain 0.75 44.0 5.06e-01 77.5% 80.8%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.71 53.0 5.08e-01 78.9% 100.0%
1b0uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 53.0 3.55e-01 78.9% 33.7%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 47.0 4.72e-01 88.7% 68.5%
2pbiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.02e-01 70.4% 76.0%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 57.0 4.40e-01 100.0% 63.9%
7o1rA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.66 58.0 4.21e-01 98.6% 94.0%
3iwgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 48.0 3.82e-01 77.5% 77.5%
7znvA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.65 56.0 4.11e-01 98.6% 96.4%
1zq1C03 1.10.150.380 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain 0.64 45.0 4.89e-01 78.9% 91.2%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.61 46.0 4.63e-01 83.1% 93.0%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 47.0 3.13e-01 83.1% 100.0%
3veaA02 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.61 32.0 3.59e-01 100.0% 67.3%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.59 46.0 4.52e-01 83.1% 78.7%
1qusA01 1.10.8.350 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase 0.59 45.0 3.92e-01 84.5% 73.5%
2qguA02 1.10.10.640 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein 0.58 42.0 4.07e-01 74.6% 82.1%
1cy9A01 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.56 43.0 3.68e-01 83.1% 86.4%
7sl8A01 1.20.1730.10 Mainly Alpha › Up-down Bundle › Sodium/glucose cotransporter › Sodium/glucose cotransporter 0.56 48.0 2.89e-01 100.0% 45.5%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.94e-01 80.3% 89.0%
4mfiA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 45.0 2.88e-01 95.8% 62.5%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 4.22e-01 78.9% 93.1%
4cgyA04 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.54 43.0 3.59e-01 87.3% 86.4%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.96e-01 71.8% 89.3%
3aqlA02 1.10.3090.10 Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 0.54 45.0 3.11e-01 93.0% 67.3%
3uorB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 43.0 3.18e-01 95.8% 85.9%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.71e-01 73.2% 80.6%
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.51 41.0 3.90e-01 97.2% 94.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979794 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.71 53.0 3.56e-01 77.5% 35.0%
3978309 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.71 52.0 3.55e-01 77.5% 35.4%
4015442 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 49.0 4.81e-01 71.8% 81.3%
3164600 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.70 51.0 3.45e-01 77.5% 33.3%
3242626 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 53.0 5.17e-01 83.1% 81.2%
3969927 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.69 51.0 3.42e-01 77.5% 44.4%
3671868 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 54.0 4.95e-01 85.9% 76.8%
3322005 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.69 51.0 3.45e-01 78.9% 24.6%
4040783 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.68 48.0 5.42e-01 78.9% 94.5%
1346040 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.68 46.0 4.11e-01 70.4% 74.7%
4852650 108.3.1.1 ↗ alpha arrays › EF-hand › Cloroperoxidase › Cloroperoxidase › Peroxidase_2 0.68 52.0 4.65e-01 81.7% 89.8%
3614991 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 51.0 4.58e-01 81.7% 80.0%
3581248 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 57.0 5.45e-01 97.2% 82.4%
3844595 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.67 51.0 4.54e-01 81.7% 73.0%
3461065 2006.1.1.46 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, HAD_2 0.67 45.0 3.07e-01 70.4% 51.8%
4992568 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.66 49.0 5.25e-01 88.7% 93.3%
4663141 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 53.0 4.55e-01 90.1% 74.2%
4088893 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 54.0 4.08e-01 91.5% 49.7%
3624123 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.65 54.0 5.45e-01 95.8% 97.1%
3791538 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 53.0 4.71e-01 100.0% 61.8%
3934746 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 54.0 5.44e-01 95.8% 97.1%
3796793 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.65 53.0 5.16e-01 100.0% 85.0%
3484511 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 50.0 4.26e-01 87.3% 77.5%
3495189 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 50.0 3.72e-01 87.3% 38.4%
3796795 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.63 53.0 4.33e-01 100.0% 47.3%
3621333 101.1.2.676 ↗ alpha arrays › HTH › HTH › winged helix domain › Mnd1, LZ3wCH 0.63 43.0 3.16e-01 71.8% 31.3%
3952715 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.63 51.0 3.56e-01 88.7% 94.8%
3791539 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.62 46.0 4.83e-01 78.9% 95.0%
3259404 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.62 48.0 3.10e-01 85.9% 99.7%
4076590 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.62 46.0 4.25e-01 78.9% 78.9%
4295466 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.61 46.0 3.21e-01 81.7% 35.0%
5036169 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.60 48.0 4.05e-01 83.1% 60.0%
4937051 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.59 39.0 3.48e-01 74.6% 50.5%
3957040 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 45.0 4.20e-01 87.3% 70.5%
5063643 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.58 50.0 3.84e-01 100.0% 47.2%
3969382 3584.1.1.0 ↗ alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain 0.56 45.0 3.19e-01 85.9% 29.5%
5065464 103.7.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind 0.56 41.0 3.79e-01 80.3% 68.4%
3756243 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.55 41.0 3.49e-01 80.3% 88.3%
4976283 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.53 41.0 3.59e-01 85.9% 99.1%
3276146 108.1.1.113 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6 0.52 41.0 3.99e-01 91.5% 81.2%
4134287 131.2.1.2 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd 0.51 41.0 2.98e-01 97.2% 34.1%
4466431 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 43.0 2.92e-01 100.0% 59.0%