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IMGVR_UViG_3300005099_000205-3300005099-Ga0072682_10918717

Arc-Vir

IMGVR_UViG_3300005099_000205-3300005099-Ga0072682_10918717

Quality

69.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-61
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 50.0 3.26e-01 75.0% 18.0%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.71 57.0 4.01e-01 100.0% 29.8%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.70 53.0 4.98e-01 85.4% 67.7%
1totA00 3.30.60.90 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type 0.68 53.0 5.20e-01 100.0% 80.8%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.68 48.0 4.43e-01 95.8% 57.8%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.66 48.0 4.37e-01 83.3% 57.6%
1g25A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 53.0 4.98e-01 100.0% 92.3%
1vw4G00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.64 46.0 4.50e-01 79.2% 83.6%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.64 43.0 4.42e-01 72.9% 85.1%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 43.0 3.28e-01 72.9% 32.0%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 44.0 4.24e-01 85.4% 67.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 43.0 4.07e-01 77.1% 60.7%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 46.0 4.10e-01 87.5% 54.7%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.60 49.0 4.13e-01 100.0% 84.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.19e-01 72.9% 40.2%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 41.0 3.45e-01 75.0% 83.7%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 42.0 4.05e-01 81.2% 66.7%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 42.0 3.39e-01 77.1% 94.9%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 39.0 3.30e-01 72.9% 38.6%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 46.0 4.28e-01 95.8% 80.3%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.35e-01 87.5% 36.5%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 38.0 3.31e-01 72.9% 49.4%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 3.13e-01 85.4% 61.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.49e-01 87.5% 65.6%
4ofyD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.00e-01 72.9% 56.3%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.54 38.0 2.77e-01 75.0% 52.2%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.28e-01 89.6% 90.3%
2xb1A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 43.0 3.55e-01 95.8% 76.0%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 35.0 3.13e-01 72.9% 48.2%
6kbrC00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 35.0 3.47e-01 81.2% 63.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.14e-01 72.9% 63.0%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 35.0 3.11e-01 77.1% 44.4%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.15e-01 87.5% 62.5%
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.51 33.0 2.41e-01 72.9% 21.6%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.50 42.0 2.56e-01 91.7% 39.4%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3643916 375.1.1.235 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.81 60.0 6.43e-01 85.4% 97.5%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 64.0 6.55e-01 89.6% 93.3%
5083204 3380.1.1.0 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.80 65.0 6.43e-01 87.5% 88.0%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 60.0 5.99e-01 85.4% 82.0%
3566304 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 58.0 6.18e-01 91.7% 97.5%
None 0.76 66.0 4.32e-01 100.0% 24.2%
3386428 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.75 52.0 3.35e-01 72.9% 18.1%
3998594 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 63.0 5.53e-01 97.9% 74.7%
4964347 904.1.1.55 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PF26046 0.75 61.0 6.27e-01 100.0% 100.0%
4466003 376.1.3.44 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.74 54.0 4.93e-01 81.2% 58.5%
4001126 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.74 59.0 5.92e-01 100.0% 88.0%
3938379 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 62.0 5.72e-01 97.9% 76.9%
4000496 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.73 65.0 4.24e-01 100.0% 49.0%
3636676 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.73 61.0 5.64e-01 100.0% 72.3%
3743562 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.73 61.0 6.07e-01 93.8% 90.0%
3271906 377.1.1.4 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.73 59.0 5.54e-01 89.6% 76.3%
None 0.73 64.0 4.40e-01 100.0% 60.6%
3215621 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.73 58.0 5.65e-01 100.0% 80.0%
3484615 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 58.0 5.59e-01 91.7% 100.0%
3247098 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.72 54.0 3.63e-01 100.0% 20.5%
3519254 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.72 62.0 4.20e-01 100.0% 56.1%
3810129 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.72 54.0 4.88e-01 85.4% 60.0%
3299584 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 60.0 5.96e-01 100.0% 94.0%
3738154 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.71 59.0 4.36e-01 100.0% 36.0%
4027754 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.71 59.0 5.83e-01 100.0% 90.0%
3783286 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.71 61.0 5.71e-01 100.0% 96.7%
3479685 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 57.0 4.61e-01 95.8% 79.0%
4015975 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 5.75e-01 93.8% 100.0%
3993294 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 60.0 5.19e-01 100.0% 92.3%
3211768 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 60.0 4.73e-01 100.0% 52.4%
3787741 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 5.10e-01 100.0% 71.7%
3181842 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 59.0 5.53e-01 100.0% 81.7%
3246456 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 56.0 5.04e-01 95.8% 80.0%
4811774 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.69 58.0 5.74e-01 97.9% 94.0%
3623557 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 58.0 5.01e-01 100.0% 93.6%
4343301 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 58.0 4.57e-01 100.0% 77.1%
3784271 376.1.1.14 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind 0.68 58.0 4.71e-01 100.0% 69.5%
3249848 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 58.0 4.88e-01 100.0% 77.6%
4001708 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 57.0 5.18e-01 100.0% 83.8%
3532210 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 57.0 4.64e-01 100.0% 58.9%
3869437 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 56.0 5.33e-01 100.0% 93.3%
3689756 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 57.0 4.15e-01 100.0% 51.0%
3209234 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 54.0 5.25e-01 100.0% 83.6%
4199672 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 45.0 3.68e-01 75.0% 36.8%
3850433 376.1.1.96 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ_ADA2 0.66 54.0 5.42e-01 93.8% 96.0%
3520111 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 55.0 5.14e-01 100.0% 92.2%
3460381 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.66 55.0 5.08e-01 100.0% 90.8%
3269939 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 55.0 4.68e-01 100.0% 68.2%
3178301 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 54.0 4.42e-01 100.0% 48.0%
3877714 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 50.0 4.34e-01 87.5% 55.0%
3598682 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 56.0 5.22e-01 97.9% 80.0%
5041606 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 54.0 4.95e-01 95.8% 98.5%
3623715 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 51.0 4.77e-01 95.8% 86.2%
3763290 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 44.0 3.31e-01 75.0% 28.5%
5023153 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 44.0 3.29e-01 75.0% 56.0%
4886012 2007.1.20.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD 0.63 44.0 2.61e-01 77.1% 9.6%
3847628 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 43.0 3.50e-01 72.9% 37.9%
4030676 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 51.0 4.75e-01 100.0% 87.7%
3954625 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.62 42.0 2.86e-01 70.8% 22.2%
4990061 12.1.1.118 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Hydantoinase_B 0.61 45.0 3.45e-01 77.1% 41.8%
3711220 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 42.0 3.85e-01 72.9% 98.5%
3511056 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.61 43.0 2.88e-01 75.0% 34.4%
3196947 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 41.0 2.31e-01 72.9% 9.6%
4027080 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.59 50.0 3.69e-01 100.0% 66.7%
146288 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.58 38.0 3.82e-01 72.9% 64.7%
3185361 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.58 46.0 3.83e-01 100.0% 54.3%
3618723 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 39.0 3.42e-01 72.9% 47.5%
4941013 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.71e-01 87.5% 58.9%
4938180 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 35.0 3.91e-01 97.9% 85.7%
4321315 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.57 45.0 2.83e-01 100.0% 18.3%
3972307 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 45.0 4.18e-01 87.5% 88.3%
3648087 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.55 43.0 2.90e-01 89.6% 87.1%
4082437 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 42.0 4.05e-01 87.5% 92.7%
3970893 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 40.0 3.78e-01 87.5% 88.3%
3898322 2002.4.1.1 a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase 0.51 42.0 2.61e-01 100.0% 17.9%
1778179 2002.4.1.1 a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase 0.51 42.0 2.62e-01 100.0% 17.8%