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IMGVR_UViG_3300005099_000205-3300005099-Ga0072682_10918728

Arc-Vir

IMGVR_UViG_3300005099_000205-3300005099-Ga0072682_10918728

Quality

77.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-82
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.83 57.0 5.95e-01 95.2% 77.2%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.79 69.0 5.93e-01 100.0% 62.5%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.75 57.0 4.96e-01 83.9% 55.7%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.73 57.0 5.50e-01 87.1% 76.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.72 48.0 3.63e-01 100.0% 28.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 41.0 3.85e-01 88.7% 48.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.68 49.0 4.46e-01 100.0% 58.7%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 38.0 3.53e-01 88.7% 46.8%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 39.0 2.46e-01 85.5% 12.3%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.63 42.0 3.39e-01 95.2% 35.0%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.61 40.0 4.27e-01 85.5% 76.4%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 45.0 3.83e-01 83.9% 48.1%
2jr1A01 3.30.160.510 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS 0.59 38.0 3.81e-01 93.5% 64.1%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.59 48.0 3.59e-01 96.8% 35.7%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.35e-01 87.1% 97.7%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 50.0 3.71e-01 100.0% 41.6%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.55e-01 90.3% 43.4%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.89e-01 85.5% 98.9%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 43.0 3.53e-01 88.7% 66.9%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.24e-01 98.4% 98.9%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.58e-01 91.9% 44.8%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 50.0 3.69e-01 100.0% 94.8%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 42.0 3.38e-01 100.0% 40.3%
2b0aA00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.55 43.0 3.08e-01 85.5% 66.7%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 41.0 3.53e-01 100.0% 51.0%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.55 37.0 3.33e-01 83.9% 51.8%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.54 47.0 3.72e-01 100.0% 59.7%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 48.0 3.92e-01 100.0% 64.7%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.28e-01 100.0% 39.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 3.67e-01 87.1% 65.3%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 44.0 3.55e-01 100.0% 51.5%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 41.0 2.55e-01 91.9% 92.2%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.26e-01 85.5% 55.3%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.51 39.0 3.75e-01 83.9% 98.6%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.37e-01 90.3% 60.7%
3e9eB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 38.0 2.69e-01 85.5% 97.9%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 2.69e-01 100.0% 30.4%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 36.0 2.24e-01 75.8% 22.1%
3iveA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 42.0 2.79e-01 100.0% 92.1%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 33.0 3.16e-01 80.6% 54.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929230 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.90 56.0 6.92e-01 87.1% 100.0%
3487738 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.86 59.0 6.49e-01 95.2% 88.0%
3459484 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.85 57.0 6.03e-01 95.2% 78.2%
3586741 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.85 58.0 5.74e-01 95.2% 67.7%
3513068 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.85 58.0 5.74e-01 95.2% 67.7%
3804854 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.84 62.0 4.89e-01 100.0% 40.9%
4285739 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.84 56.0 5.32e-01 87.1% 58.9%
3597664 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.84 58.0 6.69e-01 91.9% 97.8%
3889754 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 58.0 5.88e-01 95.2% 73.3%
3865409 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 57.0 5.85e-01 95.2% 73.3%
3549345 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.83 57.0 5.86e-01 95.2% 73.3%
4965846 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 57.0 6.54e-01 75.8% 100.0%
3933161 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.82 59.0 6.31e-01 100.0% 85.5%
3271441 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.81 61.0 6.49e-01 96.8% 90.9%
3990333 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.80 55.0 5.14e-01 95.2% 58.7%
3662203 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.79 62.0 5.60e-01 100.0% 62.4%
8200 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.79 69.0 5.55e-01 100.0% 51.3%
3250863 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.78 65.0 5.79e-01 100.0% 64.7%
4936660 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.78 66.0 7.01e-01 100.0% 100.0%
5034811 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.78 67.0 6.83e-01 98.4% 93.3%
3541586 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.78 56.0 5.27e-01 100.0% 62.7%
3866695 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.77 51.0 3.79e-01 100.0% 27.7%
4929021 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.76 54.0 3.83e-01 95.2% 25.6%
2831825 3167.1.1.1 a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.74 57.0 5.61e-01 83.9% 79.4%
3377970 3167.1.1.1 a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.74 65.0 6.01e-01 100.0% 79.7%
3700246 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.72 65.0 5.24e-01 98.4% 90.4%
4028826 377.1.2.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.72 66.0 5.22e-01 100.0% 65.0%
5045085 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.69 61.0 5.54e-01 95.2% 97.5%
4654276 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.69 62.0 5.18e-01 100.0% 100.0%
3351761 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.69 63.0 5.38e-01 100.0% 91.6%
4002681 377.1.2.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.69 50.0 4.47e-01 100.0% 54.4%
3716127 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.68 62.0 5.21e-01 100.0% 68.0%
3715795 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 53.0 4.48e-01 100.0% 52.4%
3923898 377.1.2.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.66 60.0 5.41e-01 96.8% 91.3%
3394414 376.1.2.17 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.66 60.0 4.47e-01 100.0% 45.3%
4965857 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 55.0 5.41e-01 98.4% 92.8%
4003015 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.62 43.0 4.46e-01 87.1% 78.0%
3957641 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 46.0 4.79e-01 100.0% 89.1%
3998298 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 45.0 3.16e-01 100.0% 22.9%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.60 44.0 4.74e-01 85.5% 96.0%
4587154 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.60 38.0 2.98e-01 85.5% 26.7%
3934527 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.35e-01 87.1% 83.6%
4586503 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 48.0 3.82e-01 100.0% 43.0%
3961827 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.59 44.0 3.76e-01 82.3% 83.7%
3636133 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.58 44.0 3.65e-01 85.5% 98.3%
3243536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.12e-01 88.7% 63.5%
3967508 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 40.0 3.40e-01 96.8% 41.7%
5073855 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.57 50.0 3.94e-01 100.0% 76.9%
4944381 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.56 44.0 3.34e-01 87.1% 36.1%
4994787 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 46.0 3.82e-01 91.9% 93.9%
4991697 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 48.0 3.99e-01 98.4% 93.0%
3990413 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.55 40.0 3.96e-01 96.8% 72.9%
3685866 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.55 42.0 3.59e-01 87.1% 100.0%
3427136 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.66e-01 95.2% 50.0%
3475881 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.81e-01 88.7% 68.6%
3235864 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 4.22e-01 90.3% 100.0%
3240522 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.54 41.0 2.90e-01 83.9% 33.0%
3237590 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 46.0 3.87e-01 100.0% 81.0%
3592295 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 2.97e-01 93.5% 32.5%
3178425 221.1.1.179 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ams2-SPT21_N 0.52 41.0 3.30e-01 91.9% 84.8%
4389194 4058.1.1.1 a+b three layers › a+b domain in antivirulence factor › a+b domain in antivirulence factor › a+b domain in antivirulence factor › AvrB_AvrC 0.52 39.0 3.43e-01 85.5% 70.0%
3829071 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.59e-01 95.2% 94.3%
3790199 64.5.1.0 beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB 0.50 33.0 3.40e-01 93.5% 71.7%