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IMGVR_UViG_3300005099_000396-3300005099-Ga0072682_10189822

Arc-Vir

IMGVR_UViG_3300005099_000396-3300005099-Ga0072682_10189822

Quality

78.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-108_123-129
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF15919.12 best HicB_lk_antitox 38.3 1.80e-09 100.0% 41.5%
PF21748.4 UPF0150 36.5 5.10e-09 80.6% 73.4%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dsyD00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.91 73.0 6.82e-01 89.6% 70.4%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.79 73.0 6.17e-01 100.0% 84.8%
4p78A00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.79 72.0 6.56e-01 98.5% 88.4%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 70.0 6.47e-01 98.5% 85.5%
3kwrA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 66.0 6.11e-01 100.0% 74.7%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 53.0 5.36e-01 77.6% 73.1%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 57.0 5.63e-01 83.6% 76.1%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 51.0 4.46e-01 71.6% 50.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 64.0 5.82e-01 97.0% 93.3%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 59.0 5.16e-01 89.6% 71.3%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 53.0 4.79e-01 79.1% 66.3%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.71 60.0 5.93e-01 100.0% 87.3%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.71 61.0 5.56e-01 100.0% 71.6%
2kouA00 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.65 52.0 4.50e-01 86.6% 56.9%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 53.0 4.79e-01 89.6% 72.2%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 47.0 3.69e-01 82.1% 44.2%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 42.0 2.91e-01 73.1% 21.4%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 54.0 4.15e-01 100.0% 88.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.41e-01 79.1% 40.5%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 52.0 4.39e-01 98.5% 73.7%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 43.0 2.97e-01 86.6% 22.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 43.0 3.64e-01 79.1% 44.9%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 51.0 3.76e-01 100.0% 49.7%
3r9mA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.57 44.0 2.81e-01 85.1% 89.4%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 36.0 3.61e-01 80.6% 63.4%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 34.0 3.66e-01 80.6% 77.8%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 47.0 2.96e-01 100.0% 84.1%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.18e-01 85.1% 78.4%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.84e-01 94.0% 80.5%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.51 38.0 3.14e-01 79.1% 95.8%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.50 41.0 2.67e-01 97.0% 50.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992542 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.96 72.0 8.00e-01 82.1% 94.5%
4966362 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.96 78.0 7.73e-01 89.6% 81.4%
4966261 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.95 68.0 6.99e-01 80.6% 76.9%
4634689 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.93 67.0 6.79e-01 80.6% 76.9%
5028523 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.92 67.0 6.79e-01 80.6% 76.9%
4431929 4100.1.1.4 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.92 76.0 7.77e-01 89.6% 89.2%
7731 4100.1.1.4 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.91 73.0 6.85e-01 89.6% 71.2%
4194213 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.89 61.0 6.06e-01 71.6% 71.4%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.88 64.0 6.14e-01 76.1% 72.0%
4967355 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.87 73.0 7.46e-01 97.0% 90.8%
4929701 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.86 64.0 6.76e-01 88.1% 86.7%
5048895 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.86 60.0 6.37e-01 80.6% 81.7%
4497086 4100.1.1.5 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.85 77.0 7.26e-01 98.5% 86.3%
4649870 4100.1.1.4 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.85 66.0 6.73e-01 89.6% 84.6%
3676562 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.84 65.0 4.43e-01 80.6% 26.3%
3370322 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.84 64.0 5.74e-01 80.6% 60.0%
2538763 4100.1.1.5 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.82 72.0 6.95e-01 95.5% 84.0%
5029920 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.82 66.0 6.78e-01 97.0% 87.7%
4969332 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 65.0 6.83e-01 88.1% 93.3%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.82 64.0 6.73e-01 89.6% 91.7%
4967687 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.82 62.0 6.10e-01 88.1% 75.7%
3846927 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.81 57.0 5.02e-01 77.6% 51.6%
4948406 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.81 68.0 7.03e-01 98.5% 93.7%
3462089 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.80 58.0 5.39e-01 77.6% 64.7%
3964270 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.80 75.0 6.65e-01 100.0% 81.1%
4966382 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.80 66.0 6.70e-01 94.0% 89.2%
4289599 4100.1.1.5 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.80 69.0 6.83e-01 97.0% 90.0%
4140206 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.79 59.0 5.48e-01 79.1% 64.7%
2410066 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.79 73.0 6.51e-01 100.0% 78.3%
2330315 4100.1.1.5 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.79 73.0 6.00e-01 100.0% 78.1%
3825518 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.79 56.0 5.43e-01 76.1% 66.7%
3495949 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.79 60.0 5.40e-01 80.6% 61.1%
5002624 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.79 67.0 6.60e-01 97.0% 87.1%
4487255 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 55.0 5.36e-01 77.6% 66.7%
3481102 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 54.0 4.29e-01 71.6% 38.4%
3222974 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 58.0 4.96e-01 79.1% 52.4%
5048184 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.78 72.0 6.41e-01 100.0% 73.3%
3823735 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 59.0 5.45e-01 80.6% 63.5%
5004754 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.78 54.0 4.49e-01 73.1% 91.3%
3739406 330.1.1.9 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.77 65.0 5.49e-01 89.6% 68.6%
4208191 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.77 55.0 5.14e-01 74.6% 63.7%
3490893 330.1.1.10 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.76 54.0 4.23e-01 73.1% 40.0%
1168794 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.76 53.0 4.72e-01 77.6% 51.6%
3742474 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.76 56.0 5.40e-01 77.6% 70.7%
3782338 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 54.0 4.84e-01 85.1% 54.8%
5017849 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.75 51.0 4.46e-01 71.6% 92.0%
3493131 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 54.0 4.65e-01 76.1% 51.0%
3516863 330.1.1.10 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.74 54.0 4.76e-01 76.1% 56.8%
3240286 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 55.0 4.43e-01 79.1% 71.2%
3487251 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 53.0 5.07e-01 79.1% 65.0%
3554081 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.73 50.0 5.10e-01 73.1% 73.8%
5075488 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.73 64.0 6.43e-01 100.0% 92.6%
3390831 330.1.1.10 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.73 54.0 5.07e-01 77.6% 70.0%
3928223 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 60.0 5.37e-01 89.6% 66.7%
3678841 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 52.0 4.87e-01 80.6% 62.4%
3972017 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.70 49.0 4.23e-01 73.1% 91.4%
4986253 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.70 54.0 4.51e-01 82.1% 86.4%
5069271 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.70 52.0 4.51e-01 79.1% 95.0%
3788141 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 48.0 4.68e-01 85.1% 68.0%
1346560 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.68 61.0 5.46e-01 100.0% 78.3%
3782775 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 53.0 4.77e-01 86.6% 62.2%
3168516 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.67 50.0 3.87e-01 80.6% 40.7%
5030863 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.67 52.0 4.83e-01 100.0% 65.9%
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.67 46.0 4.99e-01 77.6% 89.1%
3969097 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.65 45.0 5.00e-01 76.1% 98.0%
3827127 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 44.0 3.95e-01 73.1% 76.8%
3722216 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.62 45.0 3.38e-01 74.6% 83.2%
3610595 3131.1.1.3 a+b two layers › FYR domain › FYR domain › FYR domain › FYRC 0.60 53.0 4.17e-01 98.5% 53.6%
3242972 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 40.0 3.07e-01 70.1% 40.6%
3298796 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.59 52.0 4.01e-01 97.0% 50.3%
3411333 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.57 49.0 3.77e-01 98.5% 41.3%
4075924 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 47.0 4.04e-01 100.0% 80.0%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.25e-01 97.0% 43.5%
2877648 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.10e-01 95.5% 48.4%
3247407 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.53 39.0 3.21e-01 80.6% 42.4%
3990293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 37.0 3.97e-01 98.5% 89.1%
2069009 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.51 41.0 3.22e-01 88.1% 63.8%