Back to structures

IMGVR_UViG_3300005172_000012-3300005172-Ga0066683_100162057

Arc-Vir

IMGVR_UViG_3300005172_000012-3300005172-Ga0066683_100162057

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-78
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.73 54.0 5.30e-01 79.4% 100.0%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.71 55.0 4.82e-01 82.5% 69.2%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.67 57.0 4.67e-01 95.2% 84.9%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 57.0 4.73e-01 98.4% 88.6%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 53.0 4.64e-01 98.4% 86.5%
3nrkA02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 46.0 3.92e-01 79.4% 51.4%
3jbtA06 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.31e-01 92.1% 100.0%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 52.0 4.19e-01 92.1% 64.4%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 50.0 4.38e-01 100.0% 85.0%
4d4iA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.60 49.0 3.04e-01 92.1% 33.7%
3etcA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.59 48.0 2.92e-01 92.1% 28.5%
5kzwA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.59 49.0 3.39e-01 93.7% 51.1%
6ro0B01 3.10.40.10 Alpha Beta › Roll › Pertussis Toxin; Chain B, domain 1 › Aerolysin/Pertussis toxin (APT), N-terminal domain 0.56 38.0 3.52e-01 73.0% 53.5%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 41.0 4.02e-01 82.5% 81.2%
5m99A02 3.90.400.10 Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 0.55 38.0 3.82e-01 98.4% 70.8%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 43.0 3.95e-01 90.5% 80.9%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.79e-01 93.7% 64.9%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.72e-01 93.7% 63.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 4.04e-01 88.9% 75.0%
2nmsA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.76e-01 93.7% 66.1%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 41.0 3.07e-01 82.5% 73.9%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.44e-01 90.5% 64.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.38e-01 90.5% 78.6%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 37.0 3.85e-01 73.0% 100.0%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.53 45.0 3.23e-01 100.0% 80.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 35.0 2.81e-01 92.1% 35.8%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.66e-01 93.7% 80.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.62e-01 93.7% 76.1%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 37.0 3.22e-01 76.2% 55.2%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.04e-01 79.4% 54.7%
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 36.0 3.39e-01 73.0% 88.3%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 2.80e-01 93.7% 45.6%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.38e-01 90.5% 70.6%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.51 36.0 2.94e-01 76.2% 65.1%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.18e-01 90.5% 48.3%
1tuoA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 35.0 3.47e-01 79.4% 69.2%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.50 41.0 3.44e-01 90.5% 93.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.50 39.0 3.44e-01 100.0% 56.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4088241 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.70 56.0 5.28e-01 87.3% 89.3%
5073565 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 56.0 5.02e-01 88.9% 98.9%
3984768 3018.1.1.4 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › DUF4942 0.69 57.0 4.57e-01 93.7% 78.5%
4328415 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.68 51.0 4.67e-01 81.0% 88.2%
5049690 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 58.0 4.54e-01 100.0% 70.7%
5046813 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 56.0 4.67e-01 96.8% 81.7%
4002901 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.66 57.0 4.47e-01 100.0% 67.1%
3720390 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.65 55.0 3.35e-01 96.8% 59.8%
4972248 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 54.0 4.45e-01 100.0% 75.4%
5065216 223.7.1.0 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like 0.65 55.0 4.92e-01 100.0% 90.5%
3927907 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.65 55.0 4.99e-01 95.2% 100.0%
5073557 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 52.0 4.07e-01 90.5% 62.9%
5073548 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 54.0 4.73e-01 98.4% 98.0%
4964955 223.2.1.63 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.63 53.0 4.36e-01 100.0% 82.2%
4946284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 4.03e-01 88.9% 64.8%
3718321 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 53.0 3.11e-01 93.7% 91.9%
4077309 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.62 46.0 4.31e-01 81.0% 68.8%
3614657 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 52.0 3.07e-01 93.7% 89.9%
3691605 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 49.0 3.93e-01 90.5% 77.7%
5004606 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.60 49.0 4.07e-01 93.7% 73.3%
3716765 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 47.0 2.73e-01 85.7% 74.3%
3608374 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.12e-01 92.1% 96.7%
4947696 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.82e-01 90.5% 63.8%
4182051 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 49.0 3.03e-01 92.1% 33.2%
4944750 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 46.0 3.67e-01 88.9% 62.9%
3395174 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.59 45.0 2.84e-01 84.1% 96.1%
3485654 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 51.0 3.14e-01 100.0% 97.6%
4447285 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.59 44.0 4.31e-01 81.0% 80.0%
4201840 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.59 44.0 4.09e-01 81.0% 70.0%
3494482 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 43.0 2.66e-01 79.4% 97.2%
4446499 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.58 44.0 4.05e-01 81.0% 70.0%
3888556 220.1.1.48 beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.58 47.0 3.56e-01 90.5% 77.4%
4599964 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 43.0 4.13e-01 82.5% 74.7%
3435779 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.57 39.0 4.10e-01 71.4% 85.5%
4478959 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.57 43.0 4.12e-01 84.1% 76.0%
1651 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.57 48.0 3.98e-01 93.7% 68.1%
3861538 220.1.1.118 beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.57 39.0 3.22e-01 74.6% 69.6%
3620678 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.56 46.0 2.88e-01 88.9% 40.0%
3280386 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 38.0 4.01e-01 100.0% 80.0%
4985641 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 46.0 3.68e-01 90.5% 55.2%
5081361 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.93e-01 90.5% 79.0%
3924808 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.55 39.0 3.63e-01 93.7% 58.7%
1837127 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.55 42.0 3.90e-01 88.9% 79.8%
4659650 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 41.0 3.74e-01 84.1% 62.2%
4491427 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.55 45.0 2.88e-01 90.5% 41.0%
3416069 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 39.0 3.83e-01 76.2% 75.7%
3971267 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.55 41.0 3.31e-01 81.0% 52.0%
4667279 11.1.1.249 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_9 0.54 44.0 3.73e-01 92.1% 60.0%
5028450 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.54 40.0 3.95e-01 84.1% 81.4%
None 0.54 44.0 2.79e-01 90.5% 40.9%
4080030 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.54 40.0 3.89e-01 84.1% 76.0%
5043206 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 40.0 3.78e-01 84.1% 76.2%
5060936 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 43.0 3.89e-01 90.5% 70.0%
3407758 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 38.0 3.20e-01 77.8% 63.5%
4678264 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 40.0 3.83e-01 88.9% 93.8%
4544563 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.53 37.0 2.27e-01 77.8% 14.3%
4957336 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 2.65e-01 90.5% 18.5%
5066751 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 38.0 2.46e-01 79.4% 20.6%
4539645 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.52 44.0 2.75e-01 93.7% 79.7%
3392529 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 41.0 3.70e-01 100.0% 61.1%
3498575 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 36.0 3.19e-01 74.6% 62.0%
2756608 270.1.1.0 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.52 42.0 3.95e-01 90.5% 79.7%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 37.0 4.11e-01 92.1% 96.0%
3537919 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 41.0 3.69e-01 100.0% 61.1%
4093923 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 38.0 4.04e-01 93.7% 90.9%
3508939 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.51 42.0 3.41e-01 93.7% 76.2%
3257304 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 41.0 3.54e-01 92.1% 82.9%
3940956 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.51 41.0 2.63e-01 88.9% 34.4%
3604468 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.88e-01 93.7% 90.0%
4479376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.50 35.0 3.01e-01 76.2% 52.2%