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IMGVR_UViG_3300005239_003906-3300005239-Ga0073579_11685771
Arc-VirIMGVR_UViG_3300005239_003906-3300005239-Ga0073579_11685771
Identity
- Kingdom:
- archaea
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 258-357
Domain cluster:
rep: CAKLQF020000001.1__CAH1070197.1__SAMEA5780031_00326__00319__D31-129
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01641.27 best | SelR | 151.1 | 1.70e-44 | 100.0% | 85.3% |
D2
medium
residues 5-161
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06508.20 best | QueC | 82.4 | 4.70e-23 | 100.0% | 63.3% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c3mC01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 49.0 | 4.83e-01 | 92.4% | 99.4% |
| 3rotA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 39.0 | 4.18e-01 | 98.1% | 82.5% |
| 2vycA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 41.0 | 4.38e-01 | 100.0% | 87.1% |
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 27.0 | 3.32e-01 | 97.5% | 73.1% |
| 1pdaA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 37.0 | 4.29e-01 | 100.0% | 98.2% |
| 1t4yA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 30.0 | 3.87e-01 | 100.0% | 93.3% |
| 2haeA01 | 3.40.50.10380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain | 0.54 | 34.0 | 3.49e-01 | 91.7% | 63.2% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 27.0 | 3.61e-01 | 99.4% | 90.1% |
| 2ymbA00 | 3.30.870.30 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › MITD, C-terminal phospholipase D-like domain | 0.53 | 33.0 | 3.37e-01 | 86.6% | 62.1% |
| 1gcaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 39.0 | 3.96e-01 | 100.0% | 77.0% |
| 3u80A00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.53 | 37.0 | 4.05e-01 | 100.0% | 89.8% |
| 6cv6D00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.52 | 41.0 | 4.33e-01 | 99.4% | 91.7% |
| 1grxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 29.0 | 3.78e-01 | 100.0% | 100.0% |
| 4yleA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 38.0 | 4.01e-01 | 100.0% | 87.6% |
| 1atgA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 34.0 | 3.79e-01 | 100.0% | 86.1% |
| 4q1tB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 46.0 | 3.95e-01 | 98.7% | 71.2% |
| 3ksmA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 39.0 | 4.21e-01 | 100.0% | 100.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4338016 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.93 | 85.0 | 7.25e-01 | 100.0% | 63.9% |
| None | — | 0.93 | 84.0 | 7.35e-01 | 100.0% | 67.9% | |
| None | — | 0.93 | 84.0 | 7.34e-01 | 100.0% | 67.9% | |
| None | — | 0.90 | 83.0 | 7.13e-01 | 100.0% | 66.2% | |
| None | — | 0.90 | 81.0 | 6.92e-01 | 100.0% | 63.5% | |
| 4991573 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.89 | 81.0 | 7.03e-01 | 100.0% | 66.2% |
| 4037820 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.89 | 78.0 | 6.88e-01 | 100.0% | 66.5% |
| None | — | 0.88 | 82.0 | 7.11e-01 | 100.0% | 68.2% | |
| None | — | 0.88 | 81.0 | 6.82e-01 | 100.0% | 62.3% | |
| 4601377 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.88 | 79.0 | 6.86e-01 | 100.0% | 64.9% |
| 4930592 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.88 | 80.0 | 7.03e-01 | 100.0% | 68.2% |
| 4098108 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.87 | 82.0 | 7.10e-01 | 100.0% | 68.0% |
| 4443198 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.86 | 82.0 | 6.96e-01 | 100.0% | 65.8% |
| 4192836 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.86 | 82.0 | 6.94e-01 | 100.0% | 66.0% |
| None | — | 0.85 | 82.0 | 6.94e-01 | 100.0% | 67.7% | |
| 5039281 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.83 | 72.0 | 6.47e-01 | 100.0% | 68.8% |
| 3652829 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.70 | 45.0 | 4.76e-01 | 98.7% | 72.1% |
| 3621023 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.66 | 49.0 | 4.61e-01 | 100.0% | 62.6% |
| 3507640 | 2005.1.1.36 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 | 0.65 | 51.0 | 4.74e-01 | 100.0% | 65.6% |
| 4024600 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.63 | 31.0 | 3.31e-01 | 100.0% | 52.6% |
| 3580315 | 2005.1.1.36 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 | 0.62 | 48.0 | 4.69e-01 | 100.0% | 74.1% |
| 5030773 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.60 | 37.0 | 3.83e-01 | 87.3% | 63.5% |
| 5059127 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 39.0 | 4.23e-01 | 93.6% | 79.2% |
| 4954681 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 30.0 | 4.15e-01 | 92.4% | 97.5% |
| 2050352 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.57 | 36.0 | 4.31e-01 | 98.1% | 99.0% |
| 4511125 | 2007.1.6.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH | 0.57 | 36.0 | 3.99e-01 | 94.3% | 80.0% |
| 4890171 | 2003.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N | 0.57 | 42.0 | 4.37e-01 | 93.6% | 82.2% |
| 4338175 | 2485.1.1.27 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB | 0.56 | 31.0 | 3.68e-01 | 100.0% | 76.4% |
| 4975785 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.54 | 38.0 | 3.87e-01 | 100.0% | 72.9% |
| 3980081 | 2007.2.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PTS_IIB | 0.53 | 30.0 | 3.80e-01 | 100.0% | 93.5% |
| 5048836 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.52 | 47.0 | 4.59e-01 | 98.7% | 91.4% |
| 3885540 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.52 | 45.0 | 4.22e-01 | 96.2% | 74.5% |
| 3676379 | 2005.1.1.36 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 | 0.51 | 46.0 | 4.16e-01 | 100.0% | 75.0% |
| 3928932 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.51 | 26.0 | 3.09e-01 | 72.6% | 73.0% |
| 5000172 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.51 | 29.0 | 3.58e-01 | 96.2% | 90.5% |
| 4943325 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 45.0 | 3.91e-01 | 100.0% | 77.6% |
| 3292430 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.50 | 45.0 | 3.27e-01 | 96.8% | 60.5% |
D3
medium
residues 162-257
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lyyA00 | 1.10.287.3020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 35.0 | 3.59e-01 | 78.1% | 54.2% |
| 4irnA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 37.0 | 3.48e-01 | 71.9% | 97.5% |
| 3ieiA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.59e-01 | 75.0% | 98.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4127143 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.85 | 60.0 | 4.37e-01 | 81.2% | 29.3% |
| None | — | 0.85 | 60.0 | 4.37e-01 | 81.2% | 29.3% | |
| 4527467 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 42.0 | 2.96e-01 | 81.2% | 45.2% |
| 3937337 | 101.1.10.4 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_B | 0.53 | 38.0 | 3.01e-01 | 75.0% | 70.0% |
| 5000882 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.51 | 42.0 | 3.90e-01 | 89.6% | 94.2% |