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IMGVR_UViG_3300005239_003906-3300005239-Ga0073579_11685775
Arc-VirIMGVR_UViG_3300005239_003906-3300005239-Ga0073579_11685775
Identity
- Kingdom:
- archaea
Quality
96.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 81-343
Domain cluster:
rep: IMGVR_UViG_3300021379_002519-3300021379-Ga0213864_100077601__D395-406_424-530_578-646
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01642.29 best | MM_CoA_mutase | 416.0 | 2.60e-124 | 100.0% | 50.9% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1cA01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.99 | 98.0 | 7.39e-01 | 100.0% | 50.2% |
| 1reqB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.96 | 92.0 | 7.43e-01 | 100.0% | 58.8% |
| 1ccwB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.86 | 76.0 | 6.29e-01 | 95.8% | 57.1% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.84 | 70.0 | 5.45e-01 | 94.7% | 44.0% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.82 | 72.0 | 6.02e-01 | 97.0% | 57.4% |
| 3epnB01 | 3.20.20.540 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Radical SAM ThiC family, central domain | 0.72 | 54.0 | 5.10e-01 | 78.3% | 65.0% |
| 2ftpA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 45.0 | 4.27e-01 | 76.8% | 55.3% |
| 3bwwA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.67 | 41.0 | 4.25e-01 | 76.4% | 63.2% |
| 2bdqA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.67 | 38.0 | 4.22e-01 | 74.1% | 68.4% |
| 2qiwA01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.66 | 40.0 | 4.28e-01 | 76.4% | 66.9% |
| 3ndoA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 43.0 | 4.66e-01 | 76.8% | 77.3% |
| 2eplX02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 42.0 | 4.01e-01 | 76.0% | 55.3% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.63 | 48.0 | 4.38e-01 | 77.6% | 83.9% |
| 3fndA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 41.0 | 4.16e-01 | 76.8% | 63.7% |
| 3mbdA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 48.0 | 4.37e-01 | 77.2% | 68.5% |
| 7fc0E01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.63 | 43.0 | 4.34e-01 | 77.2% | 68.7% |
| 1vpqA00 | 3.20.20.410 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Protein of unknown function UPF0759 | 0.62 | 38.0 | 3.91e-01 | 73.8% | 61.2% |
| 7dz9A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.60 | 41.0 | 4.16e-01 | 76.8% | 68.2% |
| 2qw5A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.60 | 44.0 | 4.09e-01 | 77.6% | 60.2% |
| 3cqjA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 39.0 | 3.88e-01 | 76.4% | 62.0% |
| 1d8wC00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 45.0 | 3.86e-01 | 77.6% | 56.9% |
| 1gteB05 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 40.0 | 3.80e-01 | 76.4% | 58.2% |
| 2wmfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 44.0 | 4.02e-01 | 77.9% | 61.1% |
| 3no3A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.58 | 36.0 | 3.84e-01 | 76.8% | 68.9% |
| 4mozD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 42.0 | 3.99e-01 | 76.4% | 63.3% |
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 20.0 | 2.88e-01 | 79.8% | 66.4% |
| 1qtwA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.56 | 43.0 | 4.22e-01 | 78.7% | 75.8% |
| 2nq5A01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.54 | 41.0 | 3.61e-01 | 77.9% | 62.0% |
| 3t7vA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 41.0 | 3.77e-01 | 77.6% | 62.0% |
| 4g2dA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 40.0 | 3.80e-01 | 77.9% | 66.2% |
| 1m65A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 40.0 | 4.26e-01 | 77.9% | 93.6% |
| 4n0rA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 39.0 | 3.75e-01 | 76.8% | 82.9% |
| 1yd9B00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.52 | 32.0 | 3.71e-01 | 82.5% | 82.9% |
| 1uumA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 40.0 | 3.66e-01 | 79.8% | 76.6% |
| 5nusA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 32.0 | 3.60e-01 | 71.5% | 76.8% |
| 2wmiA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 44.0 | 3.98e-01 | 99.6% | 66.6% |
| 6en3A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 39.0 | 3.58e-01 | 77.9% | 64.3% |
| 2uv8A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 36.0 | 2.93e-01 | 72.6% | 73.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3958236 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.99 | 98.0 | 7.27e-01 | 100.0% | 47.2% |
| 4133148 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.99 | 98.0 | 7.19e-01 | 100.0% | 45.6% |
| 4963790 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.99 | 98.0 | 7.27e-01 | 100.0% | 48.0% |
| 4369287 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.99 | 97.0 | 7.30e-01 | 100.0% | 48.9% |
| 4591497 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.98 | 96.0 | 7.47e-01 | 100.0% | 55.1% |
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.97 | 95.0 | 6.74e-01 | 100.0% | 40.0% |
| 4936793 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.97 | 95.0 | 7.04e-01 | 100.0% | 46.3% |
| 4968033 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.97 | 95.0 | 6.87e-01 | 100.0% | 42.6% |
| 4042297 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.96 | 92.0 | 7.26e-01 | 100.0% | 55.3% |
| 3949726 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.94 | 91.0 | 7.08e-01 | 100.0% | 53.0% |
| 3951770 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.94 | 90.0 | 7.19e-01 | 100.0% | 55.9% |
| 4336497 | 3269.1.1.1 ↗ | alpha arrays › D-ornithine aminomutase S component-related › D-ornithine aminomutase S component-related › D-ornithine aminomutase S component-related › Lys-AminoMut_A | 0.83 | 70.0 | 5.48e-01 | 95.1% | 44.7% |
| 5051522 | 2002.1.1.158 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lys-AminoMut_A | 0.83 | 70.0 | 5.45e-01 | 95.1% | 44.3% |
| 4521973 | 2002.1.1.158 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lys-AminoMut_A | 0.82 | 71.0 | 5.56e-01 | 97.0% | 46.5% |
| 8656 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.81 | 78.0 | 6.21e-01 | 100.0% | 64.4% |
| 3282757 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.76 | 73.0 | 6.16e-01 | 100.0% | 67.3% |
| 4492246 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 0.75 | 57.0 | 4.58e-01 | 78.3% | 46.6% |
| 4665965 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.72 | 54.0 | 4.03e-01 | 77.6% | 33.6% |
| 4523097 | 2002.1.1.82 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM,ThiC-associated | 0.72 | 54.0 | 4.07e-01 | 77.6% | 34.8% |
| 4605530 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.67 | 43.0 | 4.07e-01 | 77.6% | 53.5% |
| 3245696 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.65 | 45.0 | 4.47e-01 | 77.6% | 66.9% |
| 4986150 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 46.0 | 4.10e-01 | 77.2% | 63.7% |
| 3708549 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.59 | 44.0 | 4.18e-01 | 76.8% | 67.6% |
| 4994767 | 2002.1.1.181 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GHL6 | 0.59 | 46.0 | 4.08e-01 | 81.4% | 73.9% |
| 3988728 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 44.0 | 3.97e-01 | 76.0% | 68.7% |
| 3958087 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 44.0 | 3.95e-01 | 77.6% | 62.9% |
| 4970339 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 44.0 | 4.13e-01 | 77.6% | 68.5% |
| 4160455 | 2002.1.1.96 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans | 0.57 | 40.0 | 4.01e-01 | 78.3% | 67.9% |
| 5053852 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 42.0 | 3.83e-01 | 77.6% | 63.9% |
| 4399987 | 2002.1.1.131 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › 4HFCP_synth | 0.55 | 42.0 | 4.29e-01 | 77.2% | 87.6% |
| 3580801 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.55 | 29.0 | 3.83e-01 | 72.6% | 91.7% |
| 4928346 | 2004.1.1.1219 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 | 0.55 | 30.0 | 3.54e-01 | 77.2% | 73.0% |
| 3647850 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.54 | 39.0 | 3.30e-01 | 72.6% | 89.3% |
| 3263363 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.52 | 35.0 | 3.98e-01 | 80.2% | 91.1% |
| 3842532 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 28.0 | 3.65e-01 | 72.6% | 95.0% |
| 3753158 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.51 | 28.0 | 3.56e-01 | 72.6% | 90.7% |