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IMGVR_UViG_3300005253_000250-3300005253-Ga0073583_112067924

Arc-Vir

IMGVR_UViG_3300005253_000250-3300005253-Ga0073583_112067924

Quality

90.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-85
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12961.14 best DUF3850 75.4 4.50e-21 93.8% 97.4%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.93 83.0 8.42e-01 98.8% 94.9%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.75 69.0 6.14e-01 100.0% 95.6%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.72 66.0 5.18e-01 100.0% 52.4%
4rcmB00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.72 65.0 5.17e-01 100.0% 57.9%
1te7A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.70 62.0 5.73e-01 97.5% 98.1%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.68 61.0 5.52e-01 100.0% 99.1%
4rcjA01 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.67 60.0 4.92e-01 100.0% 61.6%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 58.0 4.77e-01 100.0% 76.9%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.65 60.0 5.64e-01 100.0% 94.7%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.64 56.0 4.64e-01 100.0% 66.2%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 56.0 4.25e-01 100.0% 60.4%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 54.0 4.39e-01 100.0% 78.8%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 50.0 4.66e-01 98.8% 70.2%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.61 54.0 4.26e-01 100.0% 47.6%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.41e-01 100.0% 59.2%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 44.0 4.75e-01 98.8% 92.8%
3d4rB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 43.0 4.68e-01 76.5% 100.0%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 51.0 4.70e-01 100.0% 92.7%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 51.0 4.73e-01 100.0% 77.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 3.01e-01 98.8% 35.1%
1agjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 51.0 4.65e-01 98.8% 75.9%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 50.0 4.48e-01 98.8% 83.3%
2f9jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 40.0 4.02e-01 86.4% 73.8%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 50.0 3.82e-01 100.0% 67.2%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.56 44.0 3.80e-01 84.0% 92.7%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.68e-01 81.5% 88.9%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.55 38.0 4.12e-01 82.7% 92.2%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 47.0 4.65e-01 97.5% 88.6%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 48.0 4.38e-01 100.0% 78.2%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 47.0 4.57e-01 97.5% 87.6%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 42.0 3.12e-01 88.9% 55.2%
1f8nA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 38.0 3.25e-01 77.8% 47.6%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.61e-01 81.5% 64.2%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 3.29e-01 97.5% 41.4%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 38.0 3.21e-01 79.0% 72.6%
2jbrA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 44.0 4.25e-01 100.0% 93.7%
3n2oC01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.51 37.0 2.92e-01 97.5% 32.3%
5zw7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.51 43.0 4.02e-01 100.0% 96.3%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 2.97e-01 79.0% 60.8%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 36.0 3.10e-01 77.8% 87.1%
3dtnA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.89e-01 96.3% 33.7%
2e44A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 33.0 3.42e-01 77.8% 72.0%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
373012 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.95 84.0 8.50e-01 98.8% 93.8%
4180783 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.89 84.0 8.09e-01 100.0% 90.0%
4995643 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.83 77.0 6.22e-01 100.0% 69.0%
4970789 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.82 76.0 6.21e-01 100.0% 75.7%
5016521 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.82 76.0 6.28e-01 100.0% 74.1%
4953076 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.82 76.0 6.54e-01 100.0% 93.3%
5023730 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 72.0 5.81e-01 96.3% 68.3%
5070577 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 71.0 6.40e-01 98.8% 97.3%
2391027 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 72.0 5.68e-01 100.0% 78.9%
4938551 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 70.0 6.73e-01 95.1% 92.2%
3817355 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.78 73.0 6.11e-01 100.0% 85.4%
3653680 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.78 73.0 5.38e-01 100.0% 57.4%
5083501 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 70.0 6.79e-01 98.8% 98.9%
5035541 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 70.0 6.57e-01 97.5% 97.9%
3894869 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 69.0 5.56e-01 100.0% 81.9%
4155252 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.76 68.0 6.27e-01 98.8% 97.1%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.75 52.0 5.07e-01 81.5% 65.9%
3418432 1.1.9.3 beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.75 67.0 6.19e-01 100.0% 87.6%
5022429 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.74 67.0 5.76e-01 100.0% 84.0%
3363680 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.74 65.0 5.88e-01 100.0% 71.8%
3369437 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.73 67.0 4.65e-01 100.0% 35.2%
3325109 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.73 64.0 4.66e-01 100.0% 35.9%
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 58.0 5.59e-01 100.0% 76.7%
4444321 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.71 64.0 4.69e-01 100.0% 39.5%
4934245 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 64.0 5.04e-01 100.0% 59.4%
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 57.0 5.88e-01 95.1% 94.7%
3347068 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.68 61.0 4.51e-01 100.0% 39.5%
4961202 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 48.0 4.71e-01 86.4% 68.9%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 57.0 5.29e-01 100.0% 74.3%
4957568 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 60.0 5.93e-01 98.8% 96.5%
3974369 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 58.0 5.77e-01 100.0% 91.8%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.65 53.0 4.86e-01 98.8% 66.4%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 56.0 5.09e-01 98.8% 70.0%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 56.0 5.48e-01 95.1% 91.1%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 56.0 5.13e-01 95.1% 93.3%
4964155 1.1.9.31 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA 0.65 57.0 4.80e-01 100.0% 68.6%
4606765 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.65 54.0 4.92e-01 100.0% 68.2%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.64 56.0 4.52e-01 100.0% 76.8%
4981806 1.1.9.31 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA 0.63 55.0 4.72e-01 100.0% 69.6%
3936663 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 56.0 4.91e-01 100.0% 79.2%
3943689 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 58.0 5.17e-01 100.0% 86.4%
5082881 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 54.0 4.77e-01 100.0% 93.6%
4057590 1.1.5.86 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.61 52.0 4.47e-01 100.0% 62.1%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 55.0 5.02e-01 98.8% 87.6%
4026033 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.61 53.0 4.83e-01 97.5% 84.5%
3724368 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.61 53.0 4.71e-01 98.8% 76.7%
4407090 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.60 53.0 4.44e-01 100.0% 56.6%
3909822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 54.0 4.85e-01 100.0% 86.4%
3518839 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 51.0 3.48e-01 93.8% 38.2%
3504702 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 52.0 3.83e-01 98.8% 37.8%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.59e-01 100.0% 84.3%
3187986 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 43.0 3.93e-01 76.5% 67.6%
4094235 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 51.0 4.50e-01 100.0% 67.2%
3965428 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 50.0 4.67e-01 100.0% 77.1%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 50.0 4.52e-01 100.0% 70.4%
3786933 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.57 42.0 3.67e-01 79.0% 96.0%
5043359 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 42.0 4.48e-01 79.0% 100.0%
3650798 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.79e-01 97.5% 57.4%
4003172 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.55 50.0 3.75e-01 100.0% 52.8%
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.55 47.0 4.32e-01 100.0% 94.5%
3289280 223.1.1.42 a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_C 0.55 41.0 3.68e-01 82.7% 86.7%
3440486 1.1.7.55 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.55 49.0 4.33e-01 100.0% 76.7%
4011502 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 3.42e-01 85.2% 69.7%
3434465 1.1.7.55 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.53 48.0 4.20e-01 100.0% 81.7%
5011933 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.53 36.0 2.57e-01 100.0% 23.5%
4030042 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.53 39.0 3.37e-01 79.0% 96.2%
3175118 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.53 38.0 2.74e-01 100.0% 26.0%
3956535 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 41.0 3.42e-01 100.0% 47.1%
4238046 3112.1.1.1 beta barrels › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › YabP 0.52 36.0 3.92e-01 87.7% 92.2%
5061311 328.5.1.6 a+b two layers › IF3-like › SirA-like › SirA-like › DUF2249 0.52 36.0 3.80e-01 95.1% 84.3%
3792089 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.51 38.0 3.28e-01 80.2% 94.1%
4992091 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 42.0 2.68e-01 96.3% 22.3%
4002771 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 31.0 2.66e-01 96.3% 35.6%
4191637 1.1.7.1 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Orn_DAP_Arg_deC 0.50 39.0 2.99e-01 91.4% 35.1%
4239169 304.107.1.3 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N 0.50 40.0 3.48e-01 88.9% 68.5%