Back to structures

IMGVR_UViG_3300005263_000067-3300005263-Ga0071346_10095015

Arc-Vir

IMGVR_UViG_3300005263_000067-3300005263-Ga0071346_10095015

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-85
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05016.22 best ParE_toxin 28.4 2.90e-06 95.1% 68.5%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.86 76.0 7.41e-01 92.7% 90.8%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.84 78.0 7.62e-01 100.0% 96.6%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.80 71.0 6.97e-01 96.3% 96.6%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.77 69.0 6.55e-01 97.6% 87.4%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.75 67.0 6.60e-01 98.8% 98.8%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.74 64.0 6.21e-01 93.9% 94.4%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.65 54.0 4.63e-01 93.9% 78.6%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.93e-01 74.4% 28.9%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.63 49.0 3.83e-01 85.4% 65.2%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.97e-01 75.6% 31.0%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.94e-01 74.4% 33.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.91e-01 74.4% 32.4%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 49.0 3.12e-01 85.4% 21.4%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.92e-01 90.2% 17.2%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.11e-01 82.9% 42.4%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.88e-01 78.0% 62.6%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.51e-01 96.3% 82.8%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.82e-01 73.2% 75.5%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 41.0 3.73e-01 72.0% 99.1%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.59 42.0 3.40e-01 76.8% 76.3%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 53.0 4.49e-01 100.0% 70.5%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 40.0 2.63e-01 73.2% 30.9%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.58 43.0 3.77e-01 81.7% 97.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 42.0 3.60e-01 80.5% 91.1%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.96e-01 90.2% 66.7%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 4.01e-01 84.1% 75.5%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 38.0 3.54e-01 72.0% 100.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 45.0 4.03e-01 91.5% 75.8%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.54 38.0 4.20e-01 85.4% 98.4%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 41.0 2.81e-01 81.7% 35.8%
2ln7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.54 37.0 3.04e-01 70.7% 64.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 33.0 3.05e-01 78.0% 46.7%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.39e-01 96.3% 79.4%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 4.20e-01 90.2% 88.0%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 44.0 3.99e-01 95.1% 79.0%
6d9mA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 42.0 3.48e-01 86.6% 80.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 44.0 4.04e-01 100.0% 69.3%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 45.0 3.63e-01 98.8% 99.4%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 2.95e-01 90.2% 83.8%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.52 47.0 3.39e-01 100.0% 43.2%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.17e-01 100.0% 44.7%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 43.0 3.36e-01 92.7% 77.2%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 40.0 3.61e-01 100.0% 60.2%
2q7dA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 3.09e-01 87.8% 96.5%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.59e-01 81.7% 80.4%
5llwA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 39.0 3.35e-01 85.4% 81.0%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950220 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.94 89.0 8.60e-01 98.8% 96.7%
4937462 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 85.0 8.06e-01 98.8% 96.8%
4969644 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 80.0 7.69e-01 92.7% 96.7%
4999510 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 82.0 8.11e-01 98.8% 96.5%
5078519 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 82.0 7.73e-01 98.8% 97.9%
5063859 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 76.0 7.69e-01 91.5% 96.2%
5071213 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.87 75.0 7.64e-01 91.5% 96.2%
4887373 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 74.0 7.58e-01 90.2% 97.5%
5014147 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 77.0 7.81e-01 93.9% 100.0%
4968774 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 74.0 7.75e-01 90.2% 100.0%
5007067 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 76.0 7.37e-01 93.9% 96.7%
4941220 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 77.0 7.79e-01 93.9% 96.2%
4928181 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 80.0 7.95e-01 100.0% 96.5%
4937366 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 80.0 7.57e-01 100.0% 93.7%
5032565 4312.1.1.10 a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.84 74.0 7.36e-01 93.9% 95.3%
138730 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 78.0 7.62e-01 100.0% 96.6%
5014619 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 74.0 7.52e-01 93.9% 96.2%
4968316 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 73.0 7.16e-01 93.9% 92.0%
4933908 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 73.0 7.21e-01 92.7% 95.3%
4962176 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 72.0 7.30e-01 91.5% 98.8%
5080337 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 78.0 7.54e-01 100.0% 95.5%
4966674 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 78.0 7.69e-01 100.0% 97.6%
5007064 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.83 70.0 7.27e-01 91.5% 97.3%
5031617 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 69.0 7.06e-01 89.0% 97.5%
5018720 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 74.0 7.30e-01 95.1% 96.5%
5080427 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 73.0 7.44e-01 96.3% 96.2%
5027871 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.82 75.0 7.20e-01 98.8% 96.8%
5005256 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 72.0 7.19e-01 95.1% 96.5%
5029202 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.82 75.0 7.44e-01 100.0% 95.3%
5029836 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.82 73.0 7.40e-01 98.8% 97.5%
4927100 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.82 71.0 6.91e-01 93.9% 96.7%
4966983 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.81 69.0 6.99e-01 90.2% 97.5%
2706250 4312.1.1.7 a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.81 75.0 6.83e-01 100.0% 89.5%
3945861 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 75.0 7.30e-01 100.0% 96.7%
4967722 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 73.0 7.45e-01 97.6% 100.0%
4984297 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 72.0 7.01e-01 96.3% 91.1%
3602698 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 72.0 7.12e-01 96.3% 96.5%
3604507 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 74.0 7.05e-01 100.0% 94.7%
5052823 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 74.0 6.99e-01 100.0% 97.9%
4616795 4312.1.1.7 a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.79 71.0 6.69e-01 100.0% 95.0%
5082625 4312.1.1.7 a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.78 70.0 6.83e-01 97.6% 98.9%
134040 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 69.0 6.55e-01 97.6% 87.4%
4993827 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.71 59.0 6.05e-01 91.5% 91.3%
5061910 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.71 59.0 6.17e-01 91.5% 100.0%
4968138 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.68 58.0 5.68e-01 97.6% 86.7%
5040209 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.67 48.0 3.02e-01 75.6% 28.8%
5081030 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.67 54.0 5.68e-01 89.0% 96.0%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 40.0 4.53e-01 76.8% 83.3%
3413293 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 46.0 2.99e-01 73.2% 28.9%
4994079 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.64 51.0 5.35e-01 89.0% 96.0%
3252223 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 47.0 3.05e-01 79.3% 30.0%
4829352 5.1.2.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.62 43.0 2.67e-01 72.0% 23.2%
3479960 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 44.0 2.88e-01 73.2% 36.8%
3936285 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 43.0 3.00e-01 73.2% 29.8%
3775274 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 43.0 2.75e-01 73.2% 33.5%
3903552 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 42.0 2.76e-01 73.2% 29.2%
3643744 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.60 41.0 2.83e-01 70.7% 32.1%
4004115 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 54.0 4.26e-01 100.0% 55.2%
3399270 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 54.0 4.65e-01 100.0% 70.4%
3559299 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 53.0 4.56e-01 100.0% 70.8%
3485547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 4.17e-01 100.0% 68.8%
3885558 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 52.0 4.40e-01 100.0% 77.1%
3523477 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 52.0 4.01e-01 100.0% 64.3%
3271931 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 52.0 4.43e-01 100.0% 70.4%
3928216 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.45e-01 100.0% 68.5%
3629728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.33e-01 100.0% 68.9%
3932344 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.56 52.0 3.38e-01 100.0% 31.8%
3271309 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 51.0 4.40e-01 100.0% 74.4%
3473227 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 4.00e-01 100.0% 73.3%
3789270 5.1.4.115 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CRT10 0.55 47.0 2.90e-01 95.1% 97.5%
3613891 5.1.4.341 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.55 39.0 2.51e-01 74.4% 26.6%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.55 45.0 4.04e-01 91.5% 76.5%
164520 5.1.3.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mala_s_1-like 0.55 50.0 3.27e-01 100.0% 30.9%
3422639 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 48.0 3.11e-01 97.6% 88.2%
3388732 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.54 40.0 3.97e-01 84.1% 75.3%
3788785 5.1.5.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.54 47.0 2.94e-01 100.0% 28.7%
3898950 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 3.84e-01 100.0% 61.9%
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 36.0 3.94e-01 91.5% 90.8%
5041468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.92e-01 100.0% 24.5%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 36.0 3.62e-01 82.9% 72.9%