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IMGVR_UViG_3300005265_000383-3300005265-Ga0073580_11129914
Arc-VirIMGVR_UViG_3300005265_000383-3300005265-Ga0073580_11129914
Identity
- Kingdom:
- archaea
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-63
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qbyA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.83 | 56.0 | 4.49e-01 | 70.2% | 38.8% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 46.0 | 4.69e-01 | 71.9% | 57.9% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.73 | 45.0 | 3.86e-01 | 71.9% | 39.6% |
| 2e6oA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.71 | 51.0 | 4.46e-01 | 87.7% | 50.6% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.68 | 48.0 | 4.33e-01 | 84.2% | 53.2% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 43.0 | 3.77e-01 | 71.9% | 45.8% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.67 | 46.0 | 3.34e-01 | 71.9% | 92.3% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.66 | 46.0 | 3.38e-01 | 71.9% | 29.7% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.65 | 53.0 | 3.39e-01 | 94.7% | 19.0% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 47.0 | 4.35e-01 | 82.5% | 59.7% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 53.0 | 4.23e-01 | 93.0% | 47.7% |
| 3ehfB01 | 6.10.250.2870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 44.0 | 3.58e-01 | 73.7% | 44.2% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.62 | 52.0 | 4.13e-01 | 98.2% | 56.3% |
| 2lklA01 | 1.10.1900.40 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 | 0.62 | 44.0 | 4.14e-01 | 77.2% | 73.6% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.61 | 52.0 | 4.14e-01 | 93.0% | 49.1% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.61 | 42.0 | 4.08e-01 | 73.7% | 64.1% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 47.0 | 4.77e-01 | 84.2% | 83.9% |
| 1gkuB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 47.0 | 3.34e-01 | 86.0% | 58.9% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.60 | 45.0 | 4.05e-01 | 78.9% | 86.8% |
| 6gyhA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 49.0 | 3.37e-01 | 98.2% | 59.1% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 39.0 | 4.16e-01 | 80.7% | 78.0% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.58 | 43.0 | 3.86e-01 | 80.7% | 64.7% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.58 | 44.0 | 3.26e-01 | 82.5% | 51.0% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.57 | 48.0 | 4.26e-01 | 98.2% | 73.6% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 40.0 | 3.03e-01 | 73.7% | 30.2% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.54 | 46.0 | 4.11e-01 | 100.0% | 70.5% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 39.0 | 3.18e-01 | 78.9% | 52.7% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 40.0 | 4.25e-01 | 84.2% | 98.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5007721 | 3355.1.1.4 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DctM | 0.83 | 64.0 | 3.68e-01 | 82.5% | 10.0% |
| 3242821 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.79 | 44.0 | 4.39e-01 | 71.9% | 53.3% |
| 4635599 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.76 | 64.0 | 4.73e-01 | 96.5% | 37.8% |
| 1821875 | 4970.1.1.1 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.73 | 42.0 | 4.16e-01 | 80.7% | 55.9% |
| 1546122 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.69 | 51.0 | 5.40e-01 | 80.7% | 100.0% |
| 2388936 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.68 | 57.0 | 3.64e-01 | 93.0% | 48.9% |
| 3649730 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.66 | 58.0 | 4.93e-01 | 96.5% | 61.1% |
| 3307959 | 3835.1.1.3 ↗ | alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › DUF842 | 0.65 | 49.0 | 4.74e-01 | 82.5% | 81.5% |
| 3607864 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 53.0 | 5.11e-01 | 100.0% | 78.5% |
| 3845883 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 45.0 | 3.67e-01 | 71.9% | 42.9% |
| 5029464 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 51.0 | 4.67e-01 | 100.0% | 65.0% |
| 3653854 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 46.0 | 4.33e-01 | 91.2% | 60.0% |
| 3488233 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.64 | 55.0 | 3.78e-01 | 96.5% | 70.0% |
| 4148492 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.64 | 52.0 | 4.71e-01 | 93.0% | 73.8% |
| 3668432 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.63 | 53.0 | 4.26e-01 | 96.5% | 49.6% |
| 5045370 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 43.0 | 4.31e-01 | 73.7% | 75.0% |
| 3412630 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.62 | 52.0 | 4.03e-01 | 98.2% | 45.2% |
| 3273235 | 148.1.3.40 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid | 0.62 | 51.0 | 3.90e-01 | 96.5% | 54.5% |
| 4267024 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 43.0 | 3.94e-01 | 75.4% | 56.0% |
| 3927560 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.61 | 43.0 | 4.22e-01 | 73.7% | 73.3% |
| 172105 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.60 | 47.0 | 4.77e-01 | 84.2% | 83.9% |
| 3517516 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.59 | 40.0 | 2.73e-01 | 84.2% | 18.2% |
| 3682257 | 284.1.3.9 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › WLM | 0.59 | 48.0 | 4.09e-01 | 87.7% | 75.6% |
| 3311071 | 5063.1.1.13 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Myb_DNA-bind_3 | 0.59 | 44.0 | 4.50e-01 | 89.5% | 87.3% |
| 3993845 | 108.1.1.18 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_2 | 0.59 | 50.0 | 4.82e-01 | 98.2% | 84.6% |
| 4178707 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.59 | 41.0 | 4.45e-01 | 82.5% | 84.0% |
| 4053061 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.59 | 41.0 | 4.41e-01 | 80.7% | 85.7% |
| 4669192 | 1128.1.1.7 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF27708 | 0.59 | 43.0 | 3.18e-01 | 82.5% | 36.3% |
| 3874037 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.59 | 47.0 | 2.92e-01 | 96.5% | 14.3% |
| 3173183 | 101.1.2.134 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stn1_C | 0.58 | 47.0 | 4.22e-01 | 98.2% | 71.1% |
| 4327138 | 3826.1.1.25 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer | 0.58 | 47.0 | 4.29e-01 | 96.5% | 75.0% |
| 4965021 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 39.0 | 4.03e-01 | 73.7% | 76.4% |
| 4941665 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 43.0 | 4.01e-01 | 78.9% | 68.1% |
| 4165011 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.57 | 40.0 | 4.34e-01 | 82.5% | 87.8% |
| 3453826 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 52.0 | 4.05e-01 | 100.0% | 90.4% |
| 4223629 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 40.0 | 2.79e-01 | 77.2% | 20.0% |
| 5049296 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.56 | 36.0 | 2.51e-01 | 96.5% | 17.3% |
| 3598025 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.55 | 39.0 | 2.78e-01 | 73.7% | 27.1% |
| 4010800 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.54 | 43.0 | 2.63e-01 | 98.2% | 67.8% |
| 3686977 | 4320.1.1.1 ↗ | alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 | 0.53 | 44.0 | 3.34e-01 | 96.5% | 80.0% |
| 3649329 | 2486.1.1.11 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 | 0.53 | 40.0 | 3.06e-01 | 84.2% | 35.0% |