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IMGVR_UViG_3300005268_000050-3300005268-Ga0065698_1035002
Arc-VirIMGVR_UViG_3300005268_000050-3300005268-Ga0065698_1035002
Identity
- Kingdom:
- archaea
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-57_69-105_107-126
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fzvD02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 38.0 | 3.73e-01 | 72.5% | 55.0% |
| 3mz1B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 36.0 | 3.60e-01 | 70.6% | 56.6% |
| 3jv9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 39.0 | 3.89e-01 | 80.4% | 63.0% |
| 3fxqA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 38.0 | 3.84e-01 | 72.5% | 63.7% |
| 4la9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 38.0 | 3.56e-01 | 72.5% | 50.8% |
| 2pvuA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 37.0 | 3.53e-01 | 73.5% | 52.8% |
| 2pyyB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 37.0 | 3.50e-01 | 73.5% | 52.8% |
| 2v84A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 38.0 | 3.31e-01 | 70.6% | 62.7% |
| 4n13A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 38.0 | 3.66e-01 | 78.4% | 65.5% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.48e-01 | 72.5% | 65.0% |
| 1twyA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 38.0 | 3.65e-01 | 80.4% | 66.1% |
| 2ltlA00 | 3.30.1370.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Scaffold protein Nfu/NifU, N-terminal domain | 0.52 | 34.0 | 3.24e-01 | 79.4% | 54.6% |
| 2hqyA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.67e-01 | 84.3% | 100.0% |
| 1q2lA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 41.0 | 3.23e-01 | 91.2% | 88.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974690 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 38.0 | 3.74e-01 | 72.5% | 58.3% |
| 4944198 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 39.0 | 3.35e-01 | 74.5% | 41.2% |
| 4147372 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.58 | 38.0 | 3.78e-01 | 71.6% | 61.8% |
| 3251704 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 47.0 | 2.93e-01 | 89.2% | 38.5% |
| 3590058 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.57 | 37.0 | 3.70e-01 | 73.5% | 63.8% |
| 4117029 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 36.0 | 3.51e-01 | 73.5% | 60.0% |
| 5045522 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 45.0 | 3.42e-01 | 90.2% | 93.1% |
| 4240243 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.54 | 43.0 | 3.89e-01 | 89.2% | 94.5% |
| None | — | 0.53 | 38.0 | 2.46e-01 | 74.5% | 36.6% | |
| 4947840 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 3.40e-01 | 90.2% | 97.8% |
| 5075194 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 45.0 | 4.36e-01 | 93.1% | 91.3% |
| 3739375 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.51 | 42.0 | 3.97e-01 | 89.2% | 91.2% |
| 5047951 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.45e-01 | 91.2% | 58.4% |
| 4238737 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.50 | 40.0 | 2.86e-01 | 90.2% | 63.1% |