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IMGVR_UViG_3300005275_000006-3300005275-Ga0065719_1065901
Arc-VirIMGVR_UViG_3300005275_000006-3300005275-Ga0065719_1065901
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-214
Domain cluster:
rep: ON548425__URC16917.1__X__00163__D1-172
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.78 | 69.0 | 5.66e-01 | 92.1% | 94.6% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.76 | 68.0 | 5.46e-01 | 92.5% | 95.0% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.75 | 70.0 | 6.27e-01 | 97.2% | 92.6% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.75 | 63.0 | 5.46e-01 | 87.4% | 79.6% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.73 | 62.0 | 5.96e-01 | 87.4% | 83.9% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.71 | 55.0 | 6.06e-01 | 91.1% | 96.6% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.69 | 23.0 | 4.08e-01 | 72.0% | 91.5% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.69 | 26.0 | 4.32e-01 | 70.1% | 96.2% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.65 | 29.0 | 4.27e-01 | 89.3% | 92.7% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.64 | 36.0 | 4.56e-01 | 84.1% | 89.3% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.64 | 26.0 | 4.06e-01 | 70.1% | 95.1% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 29.0 | 4.21e-01 | 90.2% | 93.9% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 27.0 | 3.96e-01 | 87.9% | 92.2% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.62 | 31.0 | 4.43e-01 | 85.5% | 100.0% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.60 | 25.0 | 3.85e-01 | 70.1% | 96.3% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 33.0 | 4.00e-01 | 84.1% | 89.1% |
| 2ijrA01 | 3.30.70.1270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains | 0.56 | 26.0 | 3.64e-01 | 76.2% | 92.8% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.55 | 34.0 | 4.10e-01 | 84.1% | 89.7% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.54 | 33.0 | 4.07e-01 | 90.2% | 97.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081312 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.82 | 74.0 | 7.37e-01 | 93.9% | 99.1% |
| 4997193 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.79 | 66.0 | 6.27e-01 | 86.9% | 91.6% |
| 5058297 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 73.0 | 6.57e-01 | 97.7% | 96.8% |
| 3591528 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 69.0 | 6.23e-01 | 92.5% | 94.7% |
| 2711606 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.78 | 74.0 | 6.27e-01 | 100.0% | 85.6% |
| 3959043 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.78 | 74.0 | 6.32e-01 | 100.0% | 83.7% |
| 4274062 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 66.0 | 6.23e-01 | 87.4% | 84.4% |
| 4985674 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.78 | 72.0 | 6.47e-01 | 96.3% | 95.3% |
| 4085259 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.78 | 66.0 | 6.08e-01 | 87.4% | 93.6% |
| 4937156 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.78 | 74.0 | 6.65e-01 | 100.0% | 93.6% |
| None | — | 0.78 | 74.0 | 6.41e-01 | 100.0% | 85.8% | |
| 5050906 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.77 | 73.0 | 6.33e-01 | 100.0% | 94.9% |
| 3518002 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 68.0 | 5.83e-01 | 92.1% | 90.1% |
| 5000686 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 65.0 | 5.84e-01 | 87.4% | 91.9% |
| 3921299 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 68.0 | 5.94e-01 | 92.5% | 92.3% |
| 4973338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 65.0 | 5.83e-01 | 87.4% | 92.6% |
| 5060983 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 65.0 | 5.82e-01 | 87.4% | 89.1% |
| 4946875 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 65.0 | 5.97e-01 | 86.9% | 91.7% |
| 4987159 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.77 | 70.0 | 6.48e-01 | 94.9% | 90.0% |
| 3284431 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.77 | 73.0 | 6.33e-01 | 100.0% | 85.8% |
| 4978273 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.77 | 65.0 | 5.98e-01 | 87.4% | 92.8% |
| 5000831 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.77 | 70.0 | 6.38e-01 | 96.3% | 97.1% |
| 3692641 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 68.0 | 6.09e-01 | 92.5% | 92.6% |
| 4650634 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 65.0 | 6.10e-01 | 87.4% | 82.8% |
| None | — | 0.76 | 67.0 | 5.83e-01 | 91.6% | 79.7% | |
| 5066297 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.76 | 72.0 | 6.56e-01 | 100.0% | 94.2% |
| 5037338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 70.0 | 6.51e-01 | 98.1% | 95.1% |
| 5051647 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 64.0 | 6.15e-01 | 87.4% | 90.8% |
| 5027616 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 64.0 | 5.95e-01 | 87.4% | 78.1% |
| 4955551 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.76 | 70.0 | 6.71e-01 | 97.7% | 97.1% |
| 4442634 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 64.0 | 5.67e-01 | 87.4% | 93.8% |
| 4197700 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.75 | 63.0 | 5.75e-01 | 87.4% | 92.0% |
| 4554731 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.75 | 64.0 | 6.24e-01 | 88.3% | 92.6% |
| 4956744 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.75 | 63.0 | 5.91e-01 | 87.4% | 93.3% |
| 5010675 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.74 | 63.0 | 5.84e-01 | 87.4% | 94.2% |
| 4038221 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.74 | 63.0 | 6.01e-01 | 87.4% | 92.1% |
| 3989046 | 862.1.1.8 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE | 0.69 | 64.0 | 6.35e-01 | 98.6% | 99.6% |
| 4993423 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.68 | 26.0 | 4.32e-01 | 90.7% | 100.0% |
| 3726962 | 304.9.1.94 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_YTH1 | 0.62 | 32.0 | 4.35e-01 | 90.7% | 99.0% |
| 5060071 | 304.17.1.2 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN | 0.56 | 33.0 | 4.20e-01 | 72.9% | 96.9% |
D2
high
residues 231-323
Domain cluster:
rep: IMGVR_UViG_3300026623_000036-3300026623-Ga0208661_10020416__D35-120