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IMGVR_UViG_3300005275_000006-3300005275-Ga0065719_10659082
Arc-VirIMGVR_UViG_3300005275_000006-3300005275-Ga0065719_10659082
Identity
- Kingdom:
- archaea
Quality
91.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-208
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10050.15 best | DUF2284 | 84.3 | 1.20e-23 | 88.4% | 84.7% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ywqA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.69 | 52.0 | 5.19e-01 | 100.0% | 76.4% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.66 | 31.0 | 3.84e-01 | 96.0% | 69.4% |
| 3hj9B00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 48.0 | 4.70e-01 | 100.0% | 71.9% |
| 7ly5B01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 48.0 | 5.45e-01 | 99.5% | 100.0% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 49.0 | 4.84e-01 | 100.0% | 75.6% |
| 3gagA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 47.0 | 4.68e-01 | 100.0% | 76.7% |
| 3eo7A02 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.58 | 48.0 | 4.35e-01 | 100.0% | 66.7% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.56 | 36.0 | 4.39e-01 | 99.5% | 99.2% |
| 1j6rA00 | 3.40.109.40 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › | 0.56 | 52.0 | 5.23e-01 | 98.0% | 99.5% |
| 2o2kA01 | 3.10.196.10 | Alpha Beta › Roll › Cobalamin-dependent Methionine Synthase; domain 1 › Vitamin B12-dependent methionine synthase, activation domain | 0.52 | 43.0 | 4.06e-01 | 98.5% | 72.4% |
| 1a3gA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.51 | 25.0 | 3.03e-01 | 100.0% | 67.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002371 | 304.103.1.11 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › DUF2284 | 0.88 | 65.0 | 7.53e-01 | 98.5% | 99.3% |
| 4950022 | 304.103.1.11 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › DUF2284 | 0.79 | 71.0 | 7.38e-01 | 99.5% | 99.5% |
| 4011875 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.71 | 53.0 | 5.24e-01 | 100.0% | 72.4% |
| 5008619 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.71 | 52.0 | 4.93e-01 | 99.0% | 64.3% |
| 4985174 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.67 | 54.0 | 5.35e-01 | 100.0% | 78.9% |
| 4137176 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.66 | 53.0 | 4.57e-01 | 100.0% | 54.4% |
| 4960612 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.66 | 51.0 | 4.81e-01 | 99.5% | 66.8% |
| 5020835 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.64 | 53.0 | 4.89e-01 | 99.5% | 69.8% |
| 4999603 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.64 | 53.0 | 4.85e-01 | 98.5% | 68.4% |
| 4447560 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.59 | 30.0 | 3.86e-01 | 90.9% | 86.7% |
| 5071339 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.58 | 44.0 | 3.87e-01 | 95.5% | 52.9% |
| 3711302 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.57 | 33.0 | 3.86e-01 | 93.4% | 78.6% |
| 7460 | 258.1.1.0 ↗ | a+b complex topology › Methionine synthase activation domain-like › Methionine synthase activation domain-like › Methionine synthase activation domain-like | 0.56 | 52.0 | 5.23e-01 | 98.0% | 99.5% |
| 4371213 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.54 | 28.0 | 3.69e-01 | 91.9% | 95.0% |
| 4999828 | 258.1.1.1 ↗ | a+b complex topology › Methionine synthase activation domain-like › Methionine synthase activation domain-like › Methionine synthase activation domain-like › Met_synt_B12 | 0.53 | 47.0 | 4.68e-01 | 96.0% | 91.4% |
| 3926833 | 304.103.1.6 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMACHC | 0.51 | 44.0 | 4.03e-01 | 100.0% | 70.4% |
| 4954227 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.50 | 32.0 | 3.78e-01 | 100.0% | 91.9% |
D2
high
residues 232-363
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n01A00 | 3.30.70.2470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain | 0.65 | 27.0 | 3.24e-01 | 97.0% | 55.2% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.63 | 30.0 | 3.42e-01 | 100.0% | 57.6% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 26.0 | 2.82e-01 | 95.5% | 53.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4437101 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.57 | 44.0 | 4.32e-01 | 100.0% | 76.4% |
| 5011908 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.50 | 42.0 | 3.46e-01 | 90.9% | 71.2% |