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IMGVR_UViG_3300005298_000040-3300005298-Ga0071330_107091525
Arc-VirIMGVR_UViG_3300005298_000040-3300005298-Ga0071330_107091525
Identity
- Kingdom:
- archaea
Quality
73.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-154
Domain cluster:
rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04586.23 best | Peptidase_S78 | 34.1 | 4.20e-08 | 76.1% | 45.5% |
| PF14550.12 | Peptidase_S78_2 | 37.3 | 3.90e-09 | 71.8% | 79.7% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 36.0 | 4.54e-01 | 100.0% | 91.7% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.64 | 38.0 | 4.62e-01 | 100.0% | 92.1% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 35.0 | 4.36e-01 | 100.0% | 89.2% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 35.0 | 4.43e-01 | 100.0% | 94.9% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 35.0 | 4.36e-01 | 100.0% | 90.5% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 34.0 | 4.06e-01 | 100.0% | 81.1% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 34.0 | 4.27e-01 | 100.0% | 90.4% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 34.0 | 4.30e-01 | 100.0% | 94.9% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 35.0 | 4.28e-01 | 100.0% | 88.8% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 34.0 | 4.16e-01 | 100.0% | 86.4% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 33.0 | 4.21e-01 | 100.0% | 95.0% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 32.0 | 3.94e-01 | 100.0% | 82.0% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 4.00e-01 | 100.0% | 79.8% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.60 | 35.0 | 4.07e-01 | 100.0% | 81.8% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 32.0 | 3.90e-01 | 100.0% | 81.1% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 32.0 | 3.61e-01 | 91.5% | 67.9% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.58 | 36.0 | 4.13e-01 | 100.0% | 86.7% |
| 2e9wB05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 33.0 | 3.91e-01 | 91.5% | 83.5% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 32.0 | 3.75e-01 | 91.5% | 77.9% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 37.0 | 4.39e-01 | 100.0% | 95.9% |
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 31.0 | 4.02e-01 | 100.0% | 98.7% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 4.18e-01 | 100.0% | 92.8% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.75e-01 | 92.3% | 80.0% |
| 2j8aA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 34.0 | 4.10e-01 | 100.0% | 98.9% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 38.0 | 4.25e-01 | 100.0% | 93.5% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 33.0 | 3.61e-01 | 100.0% | 76.8% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.53 | 38.0 | 4.15e-01 | 100.0% | 92.2% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 25.0 | 3.15e-01 | 88.0% | 75.0% |
| 4oo1I01 | 2.40.50.880 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 27.0 | 3.42e-01 | 89.4% | 89.3% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 33.0 | 3.97e-01 | 83.8% | 100.0% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.52 | 46.0 | 4.62e-01 | 100.0% | 95.8% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 4.06e-01 | 100.0% | 91.4% |
| 5uejA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 4.03e-01 | 100.0% | 93.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964948 | 1.1.16.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 | 0.93 | 78.0 | 8.33e-01 | 98.6% | 96.8% |
| 5039158 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.84 | 77.0 | 7.33e-01 | 95.8% | 93.8% |
| 3585229 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.83 | 78.0 | 7.94e-01 | 99.3% | 99.3% |
| 3945977 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.77 | 73.0 | 6.90e-01 | 100.0% | 97.0% |
| 3838081 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 38.0 | 4.64e-01 | 86.6% | 80.0% |
| 3283466 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 47.0 | 4.74e-01 | 97.2% | 69.0% |
| 4987588 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.67 | 34.0 | 4.07e-01 | 100.0% | 71.6% |
| 3941895 | 304.8.1.43 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_5 | 0.66 | 34.0 | 4.54e-01 | 100.0% | 94.7% |
| 4969104 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.65 | 38.0 | 4.72e-01 | 100.0% | 96.5% |
| 3945401 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.64 | 37.0 | 4.65e-01 | 100.0% | 95.3% |
| 3737548 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.64 | 34.0 | 3.90e-01 | 100.0% | 67.6% |
| 4070516 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.63 | 35.0 | 4.53e-01 | 100.0% | 96.2% |
| 139586 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 35.0 | 4.39e-01 | 100.0% | 91.6% |
| 3971355 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.63 | 37.0 | 4.53e-01 | 100.0% | 95.3% |
| 3284477 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.62 | 37.0 | 4.54e-01 | 100.0% | 96.5% |
| 5025196 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.62 | 33.0 | 4.18e-01 | 100.0% | 90.0% |
| 4226508 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.61 | 34.0 | 4.24e-01 | 100.0% | 90.6% |
| 140283 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.61 | 35.0 | 4.26e-01 | 100.0% | 91.8% |
| 3970813 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.61 | 35.0 | 4.22e-01 | 100.0% | 86.2% |
| 138225 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 34.0 | 4.25e-01 | 100.0% | 94.0% |
| 4022697 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 34.0 | 4.20e-01 | 100.0% | 92.9% |
| 5022462 | 304.134.1.3 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › PF26798 | 0.59 | 34.0 | 4.17e-01 | 100.0% | 90.0% |
| 4938886 | 304.8.1.96 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 | 0.59 | 34.0 | 4.25e-01 | 100.0% | 95.3% |
| 3218711 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 33.0 | 3.78e-01 | 100.0% | 73.3% |
| 3283681 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 32.0 | 4.05e-01 | 100.0% | 92.5% |
| 4950017 | 304.134.1.3 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › PF26798 | 0.58 | 34.0 | 4.25e-01 | 100.0% | 95.3% |
| 2067736 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 38.0 | 4.47e-01 | 100.0% | 96.8% |
| 1220102 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.58 | 32.0 | 3.83e-01 | 92.3% | 78.4% |
| 3997321 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 36.0 | 3.75e-01 | 100.0% | 66.2% |
| 3839866 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 35.0 | 4.30e-01 | 100.0% | 97.8% |
| 5028837 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.57 | 30.0 | 3.91e-01 | 97.9% | 100.0% |
| 4503821 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.54 | 29.0 | 3.76e-01 | 100.0% | 100.0% |
| 4987575 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 38.0 | 4.22e-01 | 100.0% | 92.7% |
| 4976603 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 37.0 | 4.26e-01 | 100.0% | 97.1% |
| 4937320 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 36.0 | 4.01e-01 | 100.0% | 90.4% |
| 4561918 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 37.0 | 4.18e-01 | 100.0% | 98.2% |
| 4943141 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 38.0 | 4.06e-01 | 100.0% | 90.8% |
| 5073773 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 33.0 | 3.60e-01 | 88.0% | 77.5% |
| 5014271 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 39.0 | 4.17e-01 | 100.0% | 95.0% |
| 3678951 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.50 | 43.0 | 3.69e-01 | 100.0% | 57.0% |
| 3219839 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 35.0 | 2.66e-01 | 71.8% | 46.8% |
| 4001139 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.50 | 35.0 | 3.93e-01 | 100.0% | 93.6% |
D2
medium
residues 166-250
D3
medium
residues 263-326