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IMGVR_UViG_3300005298_000040-3300005298-Ga0071330_107091547

Arc-Vir

IMGVR_UViG_3300005298_000040-3300005298-Ga0071330_107091547

Quality

84.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-137
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.69 46.0 5.36e-01 91.0% 95.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 48.0 5.17e-01 100.0% 85.1%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 47.0 4.84e-01 99.2% 77.4%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.65 59.0 5.58e-01 99.2% 83.3%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 47.0 4.61e-01 100.0% 68.0%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.64 57.0 5.45e-01 100.0% 82.7%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.64 30.0 3.61e-01 72.9% 66.3%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 34.0 4.06e-01 81.2% 77.3%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.63 57.0 5.41e-01 99.2% 84.4%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.63 57.0 5.52e-01 100.0% 91.3%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 55.0 5.47e-01 99.2% 95.6%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 31.0 3.47e-01 80.5% 61.5%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.60 53.0 5.05e-01 96.2% 88.5%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.60 54.0 5.30e-01 100.0% 90.5%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 4.80e-01 98.5% 86.1%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 35.0 3.09e-01 74.4% 42.7%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 4.57e-01 98.5% 82.3%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 34.0 3.99e-01 98.5% 93.3%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.53e-01 82.0% 70.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.51 43.0 4.32e-01 95.5% 90.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.84 73.0 5.59e-01 99.2% 44.4%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 75.0 6.96e-01 99.2% 96.9%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.78 70.0 7.13e-01 100.0% 98.5%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.76 72.0 6.69e-01 100.0% 91.9%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 68.0 6.92e-01 99.2% 98.5%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 59.0 6.42e-01 100.0% 99.1%
4954551 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.74 66.0 6.60e-01 100.0% 91.9%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 66.0 6.75e-01 100.0% 98.5%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.74 69.0 6.28e-01 100.0% 77.9%
5040332 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 56.0 6.03e-01 100.0% 93.0%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.72 67.0 6.50e-01 100.0% 94.5%
4514734 1.1.13.42 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.71 56.0 6.15e-01 98.5% 100.0%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.71 64.0 5.97e-01 100.0% 78.4%
3977382 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 50.0 5.75e-01 94.7% 100.0%
3942090 1.1.5.77 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.70 64.0 5.96e-01 100.0% 80.0%
4960006 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 51.0 5.57e-01 97.7% 92.7%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.69 57.0 5.85e-01 100.0% 92.1%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 61.0 5.53e-01 100.0% 84.4%
4954561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 60.0 6.01e-01 96.2% 100.0%
4878666 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.67 59.0 5.85e-01 100.0% 90.6%
3964568 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.67 30.0 3.76e-01 95.5% 67.1%
4947204 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 54.0 5.69e-01 99.2% 95.8%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.66 60.0 5.70e-01 100.0% 84.5%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.65 59.0 5.56e-01 100.0% 83.1%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 56.0 5.61e-01 94.0% 100.0%
4952629 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 46.0 5.16e-01 97.7% 100.0%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 58.0 5.47e-01 100.0% 83.7%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 58.0 5.45e-01 100.0% 86.3%
4952430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 47.0 5.04e-01 98.5% 92.7%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 57.0 5.40e-01 99.2% 84.4%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 58.0 4.53e-01 99.2% 50.0%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 57.0 5.23e-01 100.0% 84.6%
4952429 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 45.0 5.08e-01 97.7% 100.0%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 57.0 5.24e-01 100.0% 92.6%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.63 54.0 5.53e-01 92.5% 100.0%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 57.0 5.46e-01 100.0% 88.4%
5001401 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.62 31.0 3.81e-01 90.2% 75.3%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 53.0 5.29e-01 98.5% 94.9%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.59 52.0 4.95e-01 99.2% 84.0%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.58 49.0 5.09e-01 97.7% 100.0%
3565431 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.33e-01 100.0% 50.0%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.51 43.0 4.34e-01 95.5% 91.8%
D2 high residues 153-285
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 59.0 5.60e-01 100.0% 82.1%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 60.0 5.65e-01 100.0% 82.7%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.64 58.0 5.43e-01 99.2% 83.1%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 49.0 5.38e-01 98.5% 100.0%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 57.0 5.55e-01 100.0% 90.6%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 44.0 4.28e-01 100.0% 66.7%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 56.0 5.47e-01 100.0% 90.5%
3beuA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 37.0 4.18e-01 100.0% 83.8%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 34.0 4.04e-01 97.7% 88.5%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.57 36.0 3.95e-01 96.2% 79.0%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 49.0 4.91e-01 98.5% 94.2%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.55 50.0 3.65e-01 100.0% 48.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 4.45e-01 100.0% 82.3%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.71e-01 78.9% 81.4%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 30.0 3.68e-01 88.0% 91.0%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 27.0 3.11e-01 88.7% 70.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.78 67.0 5.21e-01 100.0% 44.8%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 57.0 6.28e-01 100.0% 98.2%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 68.0 6.40e-01 100.0% 95.6%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 66.0 6.72e-01 100.0% 100.0%
4954551 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 64.0 6.36e-01 100.0% 91.1%
3581358 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 66.0 6.29e-01 100.0% 91.6%
4947204 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 58.0 6.15e-01 100.0% 95.8%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 61.0 6.29e-01 97.7% 98.4%
5079559 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 57.0 6.13e-01 98.5% 99.1%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.70 58.0 5.94e-01 100.0% 91.3%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.70 64.0 6.25e-01 100.0% 91.7%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 64.0 6.05e-01 100.0% 98.8%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.69 61.0 6.17e-01 100.0% 96.9%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.69 61.0 6.02e-01 100.0% 91.4%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.69 63.0 6.03e-01 100.0% 94.1%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.69 63.0 6.21e-01 100.0% 93.7%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.68 62.0 6.03e-01 100.0% 93.3%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.68 60.0 5.61e-01 100.0% 77.2%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 61.0 5.54e-01 100.0% 83.9%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.67 61.0 5.79e-01 100.0% 90.6%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.67 57.0 5.95e-01 97.7% 97.6%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.67 62.0 6.05e-01 100.0% 94.5%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.67 60.0 5.72e-01 99.2% 83.9%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.67 61.0 5.61e-01 100.0% 77.9%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.66 61.0 5.70e-01 100.0% 83.5%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.66 60.0 5.68e-01 100.0% 82.5%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.66 59.0 5.53e-01 100.0% 79.4%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 46.0 4.70e-01 100.0% 73.7%
5040331 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 59.0 5.74e-01 98.5% 93.8%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 44.0 4.89e-01 91.7% 88.6%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 59.0 4.64e-01 100.0% 49.6%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 59.0 5.53e-01 100.0% 83.7%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 58.0 5.44e-01 99.2% 83.1%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 58.0 5.50e-01 100.0% 86.3%
4954561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 56.0 5.66e-01 97.7% 100.0%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 59.0 5.57e-01 100.0% 88.4%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 47.0 5.22e-01 95.5% 99.0%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 58.0 5.27e-01 100.0% 82.9%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 58.0 5.28e-01 100.0% 82.9%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 39.0 4.50e-01 93.2% 87.4%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 47.0 4.78e-01 100.0% 81.5%
164720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 44.0 4.28e-01 100.0% 66.7%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.58 50.0 4.99e-01 94.0% 100.0%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.57 49.0 5.01e-01 94.7% 100.0%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.56 48.0 4.64e-01 98.5% 82.7%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.55 48.0 4.83e-01 97.0% 100.0%
3591908 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 45.0 4.14e-01 98.5% 75.0%
5038472 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 36.0 3.94e-01 92.5% 90.0%