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IMGVR_UViG_3300005298_000137-3300005298-Ga0071330_11191151

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300005298_000137-3300005298-Ga0071330_11191151 ↗
Kingdom:: archaea

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 328-491

PDB

Domain cluster: rep: MZ334520__UBF22509.1__HCTV-15-gp35__00035__D1-116_264-355

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4v02C00	2.160.20.70	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.59	36.0	4.14e-01	100.0%	82.0%
3b4nA02	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.55	48.0	4.33e-01	100.0%	68.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4025775	208.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes	0.72	39.0	4.56e-01	100.0%	74.8%
158287	207.4.1.2 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C	0.64	40.0	4.05e-01	100.0%	61.6%
3286791	207.9.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats	0.60	37.0	4.32e-01	100.0%	89.1%
3964913	207.2.1.10 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin	0.59	47.0	4.98e-01	96.3%	95.2%
4159087	208.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes	0.58	39.0	3.51e-01	100.0%	48.7%
5002393	207.14.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A	0.57	39.0	4.45e-01	100.0%	94.2%
2833318	207.2.1.74 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AC_1	0.56	38.0	4.48e-01	91.5%	100.0%
4581394	207.6.1.2 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind,HCBP_related	0.54	41.0	3.86e-01	100.0%	65.0%
3781903	208.1.1.37 ↗	beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hyphal_reg_CWP	0.52	47.0	4.25e-01	98.2%	75.1%
3550315	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.50	43.0	4.01e-01	95.1%	74.6%

D2 medium residues 22-160

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ouxA01	1.25.60.10	Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like	0.73	63.0	6.56e-01	96.4%	100.0%
4dvgB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.70	64.0	4.96e-01	100.0%	76.1%
1f59A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.67	61.0	4.29e-01	100.0%	59.5%
1ug3A01	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.64	57.0	5.17e-01	99.3%	92.8%
3juiA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.61	50.0	4.73e-01	91.4%	94.8%
2dbaA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	42.0	4.48e-01	87.1%	100.0%
4ga6A02	1.20.970.50	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 ›	0.52	46.0	4.52e-01	100.0%	100.0%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4301459	109.4.1.1913 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N, TPR_TEX10	0.72	65.0	4.01e-01	100.0%	24.9%
4544657	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	52.0	4.89e-01	84.9%	92.4%
3197497	109.4.1.313 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N	0.65	57.0	5.04e-01	98.6%	97.6%
3893140	109.6.1.4 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RanGAP1_C	0.60	49.0	4.76e-01	87.8%	100.0%
3623264	109.4.1.844 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZSWIM4-8_C	0.59	53.0	4.58e-01	100.0%	85.5%
3429733	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.57	49.0	4.41e-01	95.7%	66.7%
3370291	109.4.1.1256 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3	0.54	47.0	3.95e-01	99.3%	70.8%
3348497	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.53	47.0	4.60e-01	100.0%	100.0%
3471595	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	44.0	3.84e-01	92.1%	64.7%
5046228	3352.1.1.0 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain	0.52	41.0	2.99e-01	83.5%	60.0%

D3 medium residues 161-257

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ouxA01	1.25.60.10	Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like	0.75	68.0	6.15e-01	99.0%	75.0%
4ga6A02	1.20.970.50	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 ›	0.62	53.0	4.61e-01	95.9%	90.8%
2o71A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.62	32.0	3.31e-01	91.8%	51.6%
2b6cA01	1.20.1660.10	Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068)	0.61	49.0	4.70e-01	89.7%	100.0%
3cf6E03	1.20.870.10	Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1	0.60	49.0	4.53e-01	91.8%	96.9%
4mdcD02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	43.0	4.06e-01	76.3%	88.6%
2yinA03	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.59	42.0	3.92e-01	75.3%	89.8%
3hm6X01	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.59	51.0	3.48e-01	100.0%	56.8%
3nfqB02	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.57	47.0	4.60e-01	93.8%	94.4%
6ko8A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	43.0	3.56e-01	87.6%	78.9%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3595734	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.70	63.0	5.57e-01	100.0%	87.9%
3305378	109.4.1.361 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3	0.68	62.0	4.12e-01	100.0%	34.7%
3814537	109.4.1.1528 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TEX10	0.68	59.0	4.06e-01	95.9%	38.8%
3798290	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	57.0	3.99e-01	100.0%	50.1%
4551998	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.63	55.0	4.01e-01	100.0%	46.8%
3616543	109.3.1.229 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27576	0.60	49.0	4.16e-01	90.7%	70.3%
3466456	109.4.1.361 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3	0.60	52.0	4.03e-01	100.0%	73.0%
3797332	109.4.1.1449 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27576	0.60	48.0	4.07e-01	90.7%	66.9%
3658634	109.4.1.361 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3	0.59	51.0	4.07e-01	100.0%	62.3%
3672147	109.27.1.3 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3	0.59	51.0	4.54e-01	100.0%	94.0%
3507343	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	52.0	4.41e-01	99.0%	66.1%
3314289	109.4.1.361 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3	0.58	50.0	4.00e-01	100.0%	60.0%
3679746	109.27.1.3 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3	0.57	49.0	4.13e-01	100.0%	90.0%
3808210	226.1.1.24 ↗	a+b two layers › POZ domain › POZ domain › POZ domain › NPH3	0.56	48.0	4.24e-01	100.0%	98.1%
4405002	109.4.1.218 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP	0.55	45.0	4.05e-01	93.8%	65.5%

D4 medium residues 258-324

PDB

Domain cluster: rep: IMGVR_UViG_3300021503_000082-3300021503-Ga0190348_100029017__D368-431

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hjlA02	1.10.220.30	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain	0.76	61.0	5.21e-01	95.5%	54.7%
2qezA02	1.10.220.70	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › lyase	0.67	54.0	5.04e-01	97.0%	70.1%
1bucA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.65	51.0	4.23e-01	86.6%	73.2%
3on3B00	3.40.920.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	0.61	42.0	3.21e-01	74.6%	88.6%
3vhlA02	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.60	51.0	4.34e-01	100.0%	94.2%
3g2eB00	3.40.920.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	0.58	39.0	2.92e-01	70.1%	90.3%
2l1lB00	1.20.1440.250	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.56	48.0	4.00e-01	100.0%	73.2%
2xppA00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.56	47.0	3.87e-01	100.0%	92.0%
4zvaA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.56	43.0	3.43e-01	86.6%	61.1%
7wu8B01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.55	42.0	4.06e-01	86.6%	75.9%
3e3vA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	38.0	4.15e-01	74.6%	100.0%
3qkxB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	44.0	3.41e-01	100.0%	63.5%
3vibA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	43.0	3.28e-01	97.0%	74.1%
2jekA00	1.25.40.380	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein of unknown function DUF1810	0.53	44.0	3.66e-01	100.0%	70.7%
1u3dA03	1.10.579.10	Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	0.52	42.0	3.18e-01	94.0%	41.6%
1zk8B02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	40.0	3.40e-01	89.6%	72.0%
3deeA01	1.10.150.690	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063	0.50	35.0	3.25e-01	73.1%	70.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4496191	109.4.1.317 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5	0.69	59.0	4.55e-01	100.0%	72.7%
3854696	109.27.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain	0.65	53.0	5.32e-01	94.0%	90.0%
5059392	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.64	43.0	3.17e-01	70.1%	85.8%
3981539	532.2.1.1 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ	0.62	51.0	4.85e-01	94.0%	90.0%
4951565	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.61	41.0	3.06e-01	70.1%	84.4%
3267012	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.60	51.0	3.67e-01	100.0%	31.4%
4994323	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.59	43.0	3.31e-01	80.6%	89.4%
5004434	3558.1.1.0 ↗	alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain	0.55	45.0	3.84e-01	95.5%	79.2%
4357799	192.13.1.1 ↗	alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1	0.55	41.0	3.36e-01	82.1%	66.2%
146963	3185.1.1.1 ↗	a+b two layers › uncharacterized protein Svir_20580 › uncharacterized protein Svir_20580 › uncharacterized protein Svir_20580 › zf-HC3	0.55	41.0	3.55e-01	83.6%	84.7%
3698664	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.51	44.0	2.84e-01	100.0%	58.3%
3504835	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.51	38.0	3.38e-01	88.1%	52.7%