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IMGVR_UViG_3300005298_000137-3300005298-Ga0071330_111911536

Arc-Vir

IMGVR_UViG_3300005298_000137-3300005298-Ga0071330_111911536

Identity

Kingdom:
archaea

Quality

71.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-67
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gpeD01 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.81 52.0 5.87e-01 73.6% 89.7%
3ucxA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 53.0 3.32e-01 79.2% 26.7%
2x26B03 6.10.10.20 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › 0.70 41.0 4.80e-01 83.0% 88.2%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.68 55.0 4.52e-01 90.6% 87.8%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.63 50.0 3.15e-01 86.8% 37.2%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 46.0 3.39e-01 100.0% 28.3%
5wxuD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 36.0 2.39e-01 71.7% 13.2%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.58 47.0 4.04e-01 92.5% 80.9%
2rhcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 44.0 2.88e-01 86.8% 26.8%
4mmoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.24e-01 88.7% 82.0%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 39.0 2.98e-01 71.7% 31.4%
3kglB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 35.0 2.31e-01 71.7% 13.9%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.55 34.0 3.05e-01 90.6% 40.2%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.54 46.0 3.54e-01 100.0% 88.4%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.77e-01 86.8% 61.3%
1mgtA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.80e-01 94.3% 72.8%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 44.0 2.90e-01 100.0% 61.4%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.19e-01 84.9% 44.9%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.40e-01 81.1% 58.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284512 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.74 48.0 4.37e-01 73.6% 50.0%
5076430 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 56.0 5.23e-01 86.8% 81.5%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 50.0 4.94e-01 81.1% 72.7%
3906279 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.32e-01 84.9% 92.6%
1311130 2008.1.1.58 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.63 50.0 3.15e-01 86.8% 37.2%
5045263 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.62 53.0 4.67e-01 98.1% 85.0%
3946631 3355.1.1.2 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › CitMHS 0.62 45.0 2.65e-01 79.2% 20.2%
3948900 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.59 47.0 4.16e-01 84.9% 61.3%
4133406 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.58 39.0 2.71e-01 96.2% 18.5%
3886518 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.56 38.0 3.47e-01 86.8% 52.0%
2773770 3833.1.1.1 ↗ alpha complex topology › TcA alpha-helical shell domain › TcA alpha-helical shell domain › TcA alpha-helical shell domain 0.55 46.0 3.00e-01 100.0% 46.8%
5079692 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.55 46.0 3.69e-01 98.1% 57.4%
4631218 2003.1.5.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.54 42.0 2.62e-01 86.8% 14.4%
5007661 7584.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.52 41.0 2.75e-01 90.6% 47.7%
1871340 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.50 42.0 2.76e-01 100.0% 40.4%