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IMGVR_UViG_3300005329_000486-3300005329-Ga0070683_1000426985
Arc-VirIMGVR_UViG_3300005329_000486-3300005329-Ga0070683_1000426985
Identity
- Kingdom:
- archaea
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-212
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07995.18 best | GSDH | 68.5 | 8.90e-19 | 100.0% | 42.5% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.89 | 82.0 | 6.05e-01 | 100.0% | 42.6% |
| 3dasA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.86 | 80.0 | 5.94e-01 | 100.0% | 43.7% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.85 | 81.0 | 5.99e-01 | 100.0% | 43.2% |
| 2jkbA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.73 | 69.0 | 5.02e-01 | 100.0% | 40.4% |
| 2w38A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.72 | 66.0 | 5.09e-01 | 99.3% | 46.3% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.70 | 65.0 | 4.49e-01 | 100.0% | 47.9% |
| 1v0fA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.70 | 65.0 | 4.85e-01 | 100.0% | 47.6% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.70 | 65.0 | 4.90e-01 | 100.0% | 44.7% |
| 2w5nA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.70 | 65.0 | 4.81e-01 | 100.0% | 44.7% |
| 3afcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 60.0 | 4.15e-01 | 100.0% | 29.8% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 57.0 | 4.15e-01 | 100.0% | 33.5% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 61.0 | 4.22e-01 | 100.0% | 30.6% |
| 1s1dA00 | 2.120.10.100 | Mainly Beta › 6 Propeller › Neuraminidase › Apyrase | 0.65 | 61.0 | 4.70e-01 | 100.0% | 52.1% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 61.0 | 4.46e-01 | 100.0% | 49.5% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 59.0 | 4.49e-01 | 100.0% | 54.1% |
| 4o9dA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 59.0 | 4.28e-01 | 100.0% | 44.8% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.63 | 57.0 | 4.06e-01 | 100.0% | 34.3% |
| 8cukB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 58.0 | 4.45e-01 | 100.0% | 51.5% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 34.0 | 4.35e-01 | 79.5% | 96.3% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 35.0 | 4.42e-01 | 94.7% | 97.7% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.58 | 53.0 | 3.98e-01 | 100.0% | 55.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.56 | 34.0 | 3.47e-01 | 96.0% | 58.3% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 4.40e-01 | 96.0% | 100.0% |
| 7erlA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 4.36e-01 | 94.0% | 78.2% |
| 5z5dA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 4.12e-01 | 93.4% | 70.4% |
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 4.08e-01 | 76.2% | 93.9% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 4.30e-01 | 92.1% | 97.6% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 40.0 | 2.83e-01 | 85.4% | 85.3% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927495 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.93 | 86.0 | 6.10e-01 | 100.0% | 37.2% |
| 399504 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.89 | 82.0 | 6.05e-01 | 100.0% | 42.6% |
| 4218521 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.86 | 83.0 | 5.98e-01 | 100.0% | 44.9% |
| 5039686 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.85 | 82.0 | 6.90e-01 | 100.0% | 66.4% |
| 3832391 | 5.1.4.317 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_NOL10_N | 0.82 | 60.0 | 4.32e-01 | 100.0% | 30.1% |
| 5055395 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.79 | 59.0 | 4.35e-01 | 100.0% | 32.2% |
| 3607940 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.78 | 60.0 | 4.41e-01 | 100.0% | 32.3% |
| 3305683 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.77 | 62.0 | 4.54e-01 | 100.0% | 35.1% |
| 3272565 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.76 | 59.0 | 4.27e-01 | 100.0% | 31.0% |
| 4927376 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.75 | 68.0 | 5.11e-01 | 100.0% | 42.3% |
| 363009 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.73 | 67.0 | 5.04e-01 | 100.0% | 44.3% |
| 3831586 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.72 | 59.0 | 5.21e-01 | 100.0% | 60.5% |
| 3206926 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.71 | 52.0 | 4.22e-01 | 100.0% | 41.1% |
| 3740897 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.69 | 55.0 | 4.19e-01 | 100.0% | 37.6% |
| 5024219 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.69 | 64.0 | 4.46e-01 | 100.0% | 35.2% |
| 3988173 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.68 | 63.0 | 4.82e-01 | 100.0% | 47.5% |
| 3687101 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.68 | 63.0 | 4.98e-01 | 100.0% | 63.7% |
| 3698170 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.68 | 64.0 | 4.61e-01 | 100.0% | 44.3% |
| 3736971 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.68 | 64.0 | 4.64e-01 | 100.0% | 43.9% |
| 3204312 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.68 | 62.0 | 4.41e-01 | 100.0% | 53.5% |
| 4029119 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 62.0 | 4.66e-01 | 99.3% | 58.0% |
| 5041463 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 62.0 | 4.41e-01 | 100.0% | 51.2% |
| 3638019 | 5.1.5.88 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N | 0.67 | 61.0 | 4.23e-01 | 100.0% | 47.8% |
| 3613168 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.66 | 62.0 | 4.47e-01 | 100.0% | 44.6% |
| 4076042 | 5.1.5.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 | 0.66 | 53.0 | 3.75e-01 | 100.0% | 28.4% |
| 3363566 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.65 | 39.0 | 4.82e-01 | 75.5% | 97.8% |
| 3344355 | 5.1.4.227 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_At4g14310 | 0.65 | 56.0 | 3.99e-01 | 100.0% | 32.6% |
| 4028777 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.65 | 58.0 | 3.78e-01 | 94.0% | 66.8% |
| 3302013 | 5.1.5.137 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_At4g14310 | 0.65 | 56.0 | 3.98e-01 | 100.0% | 32.5% |
| 4174947 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.65 | 59.0 | 4.12e-01 | 100.0% | 52.9% |
| 4026437 | 5.1.3.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA | 0.64 | 58.0 | 4.52e-01 | 100.0% | 46.2% |
| 4929596 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 58.0 | 4.14e-01 | 100.0% | 46.4% |
| 3376439 | 5.1.4.276 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd | 0.63 | 56.0 | 4.11e-01 | 100.0% | 37.1% |
| 3435849 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 37.0 | 4.77e-01 | 99.3% | 100.0% |
| 4021124 | 5.1.5.88 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N | 0.63 | 58.0 | 3.96e-01 | 100.0% | 40.2% |
| 2080862 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.63 | 59.0 | 4.99e-01 | 100.0% | 84.0% |
| 4023615 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.63 | 58.0 | 4.71e-01 | 100.0% | 93.4% |
| 3599742 | 5.1.5.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 | 0.62 | 58.0 | 4.16e-01 | 100.0% | 43.9% |
| 3441723 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.62 | 54.0 | 4.42e-01 | 100.0% | 50.9% |
| 3611540 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 56.0 | 4.05e-01 | 100.0% | 36.6% |
| 4061414 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.62 | 56.0 | 4.19e-01 | 99.3% | 52.0% |
| None | — | 0.62 | 57.0 | 3.79e-01 | 100.0% | 38.4% | |
| 4890224 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.62 | 56.0 | 3.84e-01 | 99.3% | 37.9% |
| 3680499 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.61 | 56.0 | 3.45e-01 | 99.3% | 19.1% |
| 4091266 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.61 | 56.0 | 3.68e-01 | 100.0% | 34.3% |
| 3463768 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 49.0 | 3.77e-01 | 100.0% | 37.9% |
| 4022926 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.80e-01 | 100.0% | 33.4% |
| 3695422 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 57.0 | 4.71e-01 | 100.0% | 89.0% |
| 3685128 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.61 | 55.0 | 3.63e-01 | 100.0% | 31.4% |
| 4522761 | 3308.1.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme | 0.61 | 39.0 | 4.47e-01 | 99.3% | 88.2% |
| 3684521 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.60 | 53.0 | 4.31e-01 | 100.0% | 51.0% |
| 4022704 | 5.1.5.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 | 0.59 | 54.0 | 4.02e-01 | 100.0% | 57.6% |
| 3303238 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.58 | 39.0 | 4.34e-01 | 100.0% | 86.7% |
| 3820010 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.57 | 35.0 | 3.46e-01 | 96.0% | 55.6% |
| 3415353 | 5.1.4.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 | 0.57 | 52.0 | 3.98e-01 | 100.0% | 47.2% |
| 4608520 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.56 | 52.0 | 3.10e-01 | 100.0% | 18.0% |
| 3420926 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 51.0 | 3.85e-01 | 100.0% | 41.9% |
| 5040847 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.56 | 51.0 | 4.08e-01 | 99.3% | 54.6% |
| 3583345 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.56 | 50.0 | 3.64e-01 | 100.0% | 37.5% |
| 3496018 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 49.0 | 3.47e-01 | 100.0% | 48.5% |
| 3225193 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.53 | 35.0 | 3.66e-01 | 88.1% | 72.1% |
| 3827726 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 47.0 | 3.84e-01 | 98.7% | 67.2% |
| 4928436 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 31.0 | 3.20e-01 | 72.8% | 60.0% |
| 3241005 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.51 | 35.0 | 3.70e-01 | 72.2% | 78.5% |
| 1887056 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 38.0 | 4.16e-01 | 93.4% | 98.3% |
D2
medium
residues 6-57
Domain cluster:
rep: IMGVR_UViG_3300050514_000229-3300050514-nmdc-mga08x19_6773_c1_3_356__D1-50