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IMGVR_UViG_3300005398_000042-3300005398-Ga0066858_100027413
Arc-VirIMGVR_UViG_3300005398_000042-3300005398-Ga0066858_100027413
Identity
- Kingdom:
- archaea
Quality
83.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-201
Domain cluster:
rep: ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00352__D40-229
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16724.12 best | T4-gp15_tss | 250.7 | 1.60e-74 | 100.0% | 76.8% |
D2
high
residues 207-265
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hxlA05 | 3.30.360.90 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.67 | 44.0 | 4.16e-01 | 81.4% | 56.5% |
| 1w0pA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.63 | 53.0 | 3.33e-01 | 100.0% | 94.7% |
| 2yn0A00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.63 | 47.0 | 3.18e-01 | 83.1% | 95.2% |
| 3vwdA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 46.0 | 3.23e-01 | 79.7% | 27.0% |
| 2e1qC05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.62 | 42.0 | 3.35e-01 | 76.3% | 35.6% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 43.0 | 3.40e-01 | 81.4% | 36.1% |
| 4xa2A01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.59 | 43.0 | 3.51e-01 | 81.4% | 39.8% |
| 1nbuA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.59 | 44.0 | 3.57e-01 | 81.4% | 78.0% |
| 4e0aA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 42.0 | 3.16e-01 | 79.7% | 29.5% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 49.0 | 3.41e-01 | 94.9% | 63.7% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.57 | 36.0 | 3.54e-01 | 78.0% | 58.5% |
| 2yzcA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.57 | 41.0 | 2.72e-01 | 81.4% | 35.9% |
| 3c8iA00 | 2.40.410.10 | Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily | 0.56 | 48.0 | 3.85e-01 | 100.0% | 65.4% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.56 | 44.0 | 3.46e-01 | 84.7% | 45.5% |
| 4owzA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.55 | 47.0 | 3.70e-01 | 100.0% | 71.6% |
| 5fc1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 48.0 | 2.91e-01 | 100.0% | 24.4% |
| 2bolA03 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 47.0 | 4.11e-01 | 100.0% | 63.4% |
| 5karA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 46.0 | 2.84e-01 | 100.0% | 23.9% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.32e-01 | 86.4% | 41.4% |
| 1gwyA00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.54 | 46.0 | 3.36e-01 | 100.0% | 45.1% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 40.0 | 2.92e-01 | 81.4% | 30.5% |
| 1b1eA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.54 | 44.0 | 3.63e-01 | 100.0% | 65.9% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.29e-01 | 83.1% | 44.0% |
| 7cymA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.53 | 38.0 | 3.27e-01 | 81.4% | 64.0% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 44.0 | 3.68e-01 | 96.6% | 74.8% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 44.0 | 3.75e-01 | 98.3% | 81.6% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.97e-01 | 100.0% | 91.6% |
| 1ow1A00 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.52 | 38.0 | 2.88e-01 | 83.1% | 84.4% |
| 8evkA01 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.52 | 39.0 | 3.21e-01 | 81.4% | 92.6% |
| 3v5nB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 40.0 | 2.91e-01 | 91.5% | 62.5% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3271192 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.67 | 52.0 | 3.14e-01 | 83.1% | 80.3% |
| 3497397 | 395.1.1.0 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related | 0.66 | 46.0 | 4.32e-01 | 83.1% | 58.7% |
| 4156336 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.66 | 49.0 | 3.80e-01 | 79.7% | 36.9% |
| 3960778 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 57.0 | 4.84e-01 | 98.3% | 91.6% |
| 4000010 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 47.0 | 4.27e-01 | 79.7% | 57.5% |
| 3788482 | 2484.1.1.90 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C | 0.63 | 53.0 | 3.50e-01 | 94.9% | 47.8% |
| 3634542 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.63 | 46.0 | 3.40e-01 | 79.7% | 31.5% |
| 3603359 | 4.1.1.459 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29994 | 0.63 | 49.0 | 4.00e-01 | 84.7% | 45.5% |
| 4112665 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.61 | 45.0 | 3.73e-01 | 79.7% | 77.3% |
| 4013325 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.61 | 47.0 | 3.66e-01 | 83.1% | 57.6% |
| 3723082 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 52.0 | 3.42e-01 | 100.0% | 30.0% |
| 3914410 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.61 | 51.0 | 4.80e-01 | 96.6% | 83.8% |
| 4361074 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.61 | 46.0 | 3.80e-01 | 81.4% | 75.2% |
| 3255739 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.60 | 51.0 | 4.88e-01 | 96.6% | 88.6% |
| 3689239 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.60 | 52.0 | 4.67e-01 | 100.0% | 80.0% |
| 4558946 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.60 | 45.0 | 3.69e-01 | 81.4% | 79.1% |
| 3467991 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.59 | 52.0 | 3.61e-01 | 100.0% | 81.5% |
| None | — | 0.59 | 51.0 | 3.02e-01 | 100.0% | 83.5% | |
| 3887745 | 220.1.1.149 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF4551 | 0.59 | 50.0 | 3.84e-01 | 96.6% | 45.7% |
| 3550635 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.58 | 49.0 | 4.73e-01 | 98.3% | 88.6% |
| 3511117 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.58 | 50.0 | 3.64e-01 | 98.3% | 64.2% |
| 3396462 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 49.0 | 4.83e-01 | 98.3% | 92.3% |
| 3991208 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 50.0 | 4.07e-01 | 100.0% | 72.2% |
| 3991835 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.57 | 43.0 | 3.26e-01 | 79.7% | 38.5% |
| 3712462 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.57 | 49.0 | 2.89e-01 | 100.0% | 48.6% |
| 3222710 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 49.0 | 4.52e-01 | 98.3% | 75.6% |
| 3404065 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.57 | 49.0 | 4.45e-01 | 98.3% | 78.8% |
| 3907123 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.56 | 48.0 | 3.43e-01 | 98.3% | 38.4% |
| 3821170 | 319.1.1.15 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 | 0.56 | 48.0 | 4.00e-01 | 100.0% | 55.5% |
| 3251381 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.56 | 47.0 | 4.65e-01 | 98.3% | 92.3% |
| 2388815 | 5.1.4.292 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_EIPR1 | 0.54 | 37.0 | 3.36e-01 | 81.4% | 51.8% |
| 4844428 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.54 | 44.0 | 4.14e-01 | 94.9% | 88.0% |
| 3388200 | 230.1.1.4 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB | 0.54 | 39.0 | 3.26e-01 | 78.0% | 73.3% |
| 3587662 | 330.18.1.0 ↗ | a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA6 › Anti-CRISPR protein AcrIIA6 | 0.53 | 46.0 | 4.09e-01 | 100.0% | 68.9% |
| 3943569 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 41.0 | 3.19e-01 | 94.9% | 100.0% |
| 3389219 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.51 | 44.0 | 2.69e-01 | 100.0% | 26.7% |
| 3621257 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.50 | 43.0 | 4.02e-01 | 100.0% | 78.7% |
| 3811915 | 243.3.1.26 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 | 0.50 | 36.0 | 2.91e-01 | 78.0% | 38.3% |