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IMGVR_UViG_3300005398_000266-3300005398-Ga0066858_1000123411

Arc-Vir

IMGVR_UViG_3300005398_000266-3300005398-Ga0066858_1000123411

Identity

Kingdom:
archaea

Quality

93.3 mean pLDDT

Cluster

View cluster (69 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-143
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25109.2 best HAD_PNKP 114.4 6.80e-33 100.0% 90.2%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xrpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.96 87.0 8.80e-01 100.0% 94.6%
1ltqA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.90 86.0 8.31e-01 100.0% 90.2%
4fypB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.81 77.0 6.31e-01 100.0% 61.1%
6ie0A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 46.0 4.60e-01 100.0% 68.7%
1lw7A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 54.0 5.02e-01 98.5% 76.3%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 51.0 5.09e-01 99.2% 90.9%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 50.0 4.64e-01 94.7% 81.8%
2zejB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 39.0 4.38e-01 80.2% 92.1%
3gbvA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 48.0 4.60e-01 94.7% 88.6%
3ua3A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 49.0 4.51e-01 100.0% 94.8%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 44.0 3.85e-01 98.5% 58.1%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 48.0 4.07e-01 100.0% 65.0%
4fkcA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 39.0 3.88e-01 100.0% 73.8%
4ljsA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 39.0 3.77e-01 78.6% 79.3%
4s2rP02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 43.0 4.08e-01 92.4% 93.0%
5ly3A02 3.30.420.570 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 37.0 3.16e-01 76.3% 98.7%
1reqB01 3.20.20.240 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase 0.51 44.0 3.13e-01 96.9% 62.2%
5jnmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.97e-01 100.0% 69.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
9887 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.90 86.0 8.16e-01 100.0% 86.6%
4972563 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.86 82.0 7.50e-01 100.0% 90.9%
4992093 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.83 80.0 7.57e-01 100.0% 89.3%
3432667 2006.1.1.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B 0.83 55.0 6.46e-01 74.8% 92.6%
4014119 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.82 78.0 6.06e-01 100.0% 71.9%
5001495 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.80 76.0 6.97e-01 100.0% 92.1%
3175536 2006.1.1.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_1 0.80 75.0 6.05e-01 100.0% 74.9%
3612566 2005.2.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF 0.66 59.0 4.76e-01 98.5% 95.4%
3521755 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.61 49.0 4.64e-01 100.0% 71.2%
3165669 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.61 55.0 4.75e-01 98.5% 64.5%
3657471 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 54.0 4.92e-01 100.0% 91.4%
4956540 7597.1.1.0 ↗ a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.59 35.0 4.08e-01 94.7% 88.2%
4962989 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.58 48.0 4.32e-01 100.0% 63.6%
3710859 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 50.0 3.71e-01 97.7% 89.4%
3703332 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.56 51.0 4.51e-01 100.0% 79.5%
3649673 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.54 38.0 3.15e-01 72.5% 83.4%
5054573 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.53 40.0 4.07e-01 80.9% 93.1%
3500262 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 39.0 2.96e-01 82.4% 66.6%