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IMGVR_UViG_3300005401_000090-3300005401-Ga0066857_1000071412

Arc-Vir

IMGVR_UViG_3300005401_000090-3300005401-Ga0066857_1000071412

Quality

81.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-210
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.79 62.0 6.63e-01 94.5% 94.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.77 66.0 6.76e-01 98.2% 95.1%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.74 38.0 5.15e-01 77.1% 98.2%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 62.0 6.16e-01 100.0% 87.6%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.73 58.0 4.78e-01 97.2% 48.2%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 62.0 6.11e-01 100.0% 87.7%
1b8dA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.62 47.0 4.16e-01 80.7% 63.4%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.58 30.0 2.97e-01 100.0% 43.8%
2iw5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.66e-01 85.3% 87.2%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.56 50.0 3.39e-01 100.0% 95.2%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 48.0 3.70e-01 99.1% 64.5%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 41.0 3.66e-01 78.0% 85.3%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 45.0 4.27e-01 90.8% 87.1%
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.54 36.0 3.93e-01 79.8% 86.9%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 4.03e-01 76.1% 100.0%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 44.0 4.12e-01 89.9% 85.0%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 39.0 4.02e-01 77.1% 100.0%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.53 35.0 3.52e-01 89.0% 65.8%
2zw3A00 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.52 38.0 3.19e-01 78.0% 96.5%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 34.0 3.82e-01 86.2% 92.3%
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 46.0 3.98e-01 98.2% 78.0%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.51 36.0 3.36e-01 72.5% 62.4%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.50 44.0 3.92e-01 100.0% 67.5%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.50 35.0 3.24e-01 71.6% 83.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000678 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.80 66.0 6.91e-01 98.2% 94.0%
3736572 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.72 61.0 5.69e-01 100.0% 73.3%
3562670 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.71 67.0 4.86e-01 100.0% 66.8%
3978753 3759.1.1.1 alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm 0.69 55.0 5.16e-01 83.5% 76.2%
3495121 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 56.0 5.70e-01 89.9% 100.0%
3391331 101.1.10.6 alpha arrays › HTH › HTH › Cyclin-like › RB_A 0.64 58.0 4.86e-01 100.0% 65.9%
3759371 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 45.0 4.93e-01 89.9% 94.4%
3957654 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.60 52.0 4.49e-01 96.3% 76.0%
3880013 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 46.0 4.92e-01 95.4% 100.0%
5011454 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 46.0 4.46e-01 100.0% 75.8%
3370602 109.4.1.1520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif 0.58 46.0 3.32e-01 91.7% 29.8%
2043430 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.56 44.0 3.97e-01 81.7% 75.2%
4979163 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 39.0 3.48e-01 72.5% 76.8%
4075945 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.55 45.0 4.17e-01 90.8% 89.0%
3736606 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.54 44.0 3.79e-01 91.7% 86.5%
4272840 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.54 47.0 3.90e-01 100.0% 55.7%
3787874 180.1.1.6 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT 0.53 45.0 3.78e-01 95.4% 74.5%
3520105 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.53 38.0 3.34e-01 73.4% 64.5%
3663333 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.53 40.0 3.50e-01 82.6% 98.9%
3249291 3932.1.1.0 alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain 0.52 38.0 3.64e-01 97.2% 63.8%
3832127 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.52 38.0 3.67e-01 76.1% 91.2%
3934749 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 36.0 3.36e-01 71.6% 77.0%
3318512 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.51 36.0 3.34e-01 93.6% 57.1%
4025966 103.4.1.2 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.51 36.0 3.80e-01 98.2% 82.0%
D2 high residues 218-324
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.75 45.0 5.13e-01 86.9% 80.2%
4nxiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 45.0 3.70e-01 86.9% 35.2%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 54.0 4.50e-01 93.5% 90.8%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 56.0 4.23e-01 100.0% 49.3%
2yxlA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.62 55.0 4.95e-01 99.1% 75.7%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.61 47.0 5.04e-01 95.3% 98.9%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.60 40.0 4.35e-01 80.4% 82.0%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.60 48.0 4.65e-01 85.0% 97.5%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.60 47.0 4.43e-01 85.0% 70.6%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 49.0 3.94e-01 90.7% 69.5%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.59 47.0 3.91e-01 87.9% 51.5%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.59 41.0 4.49e-01 87.9% 90.7%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 53.0 4.85e-01 99.1% 86.2%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.59 51.0 4.71e-01 95.3% 75.5%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 52.0 4.73e-01 100.0% 83.7%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 46.0 4.13e-01 88.8% 69.4%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 47.0 4.50e-01 89.7% 86.1%
3akaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 48.0 4.31e-01 100.0% 79.6%
1jq5A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.56 47.0 3.86e-01 94.4% 94.2%
1at9A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 46.0 3.60e-01 92.5% 44.8%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 48.0 4.55e-01 100.0% 87.9%
2gkmA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 48.0 4.55e-01 100.0% 84.3%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.53 32.0 3.61e-01 90.7% 79.7%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 40.0 3.74e-01 96.3% 64.7%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 37.0 3.46e-01 90.7% 57.2%
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.52 37.0 3.18e-01 77.6% 45.2%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 43.0 3.54e-01 95.3% 58.3%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 43.0 3.64e-01 92.5% 77.6%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.51 44.0 3.88e-01 97.2% 74.7%
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 44.0 3.00e-01 100.0% 94.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999696 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.65 46.0 3.06e-01 73.8% 19.0%
3539629 101.1.10.12 alpha arrays › HTH › HTH › Cyclin-like › Spy1 0.62 53.0 4.93e-01 98.1% 73.3%
3602030 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 42.0 4.43e-01 73.8% 92.6%
3701680 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 44.0 4.60e-01 89.7% 91.9%
3845036 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.57 42.0 3.07e-01 77.6% 33.0%
4642297 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.54 44.0 4.14e-01 92.5% 82.1%
3945314 4025.1.1.1 alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa 0.53 45.0 3.67e-01 92.5% 82.0%
5047617 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 43.0 3.48e-01 89.7% 50.5%
4181804 4025.1.1.1 alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa 0.53 43.0 3.48e-01 89.7% 78.6%
136244 129.1.1.1 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6PGD 0.53 41.0 3.02e-01 84.1% 70.9%
5013613 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 44.0 3.62e-01 92.5% 50.5%
3259377 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.52 36.0 3.77e-01 70.1% 80.0%
3721449 7076.1.1.0 0.52 38.0 4.16e-01 82.2% 97.6%
3295267 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.51 41.0 3.58e-01 89.7% 64.2%
5024815 140.1.1.15 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g 0.51 38.0 3.25e-01 82.2% 84.6%
4946046 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.51 45.0 3.08e-01 100.0% 90.5%
3578378 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 41.0 3.83e-01 90.7% 89.3%
4957793 4025.1.1.1 alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa 0.51 42.0 3.48e-01 92.5% 82.5%
5020772 4025.1.1.1 alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa 0.50 42.0 3.50e-01 92.5% 89.7%