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IMGVR_UViG_3300005401_000094-3300005401-Ga0066857_100040101
Arc-VirIMGVR_UViG_3300005401_000094-3300005401-Ga0066857_100040101
Identity
- Kingdom:
- archaea
Quality
76.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 107-260
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 48.0 | 4.36e-01 | 73.4% | 75.5% |
| 3mkzN00 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 27.0 | 3.13e-01 | 81.8% | 53.6% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.59 | 48.0 | 4.55e-01 | 86.4% | 91.8% |
| 3ajwA00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 38.0 | 4.13e-01 | 70.1% | 82.1% |
| 1vnsA01 | 1.20.144.10 | Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase | 0.56 | 37.0 | 3.57e-01 | 85.1% | 58.3% |
| 4d81A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 31.0 | 3.82e-01 | 92.9% | 87.2% |
| 4pqhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 21.0 | 2.41e-01 | 77.9% | 43.6% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.53 | 37.0 | 3.35e-01 | 70.8% | 62.4% |
| 3qweA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 46.0 | 3.79e-01 | 90.9% | 88.5% |
| 6q45G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.53 | 40.0 | 4.10e-01 | 83.1% | 81.5% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.53 | 39.0 | 3.90e-01 | 79.2% | 73.3% |
| 6iknD01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 47.0 | 3.88e-01 | 96.8% | 89.9% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 28.0 | 3.40e-01 | 76.0% | 77.6% |
| 3n00A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 33.0 | 3.19e-01 | 85.1% | 53.8% |
| 4wjg400 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.51 | 40.0 | 3.31e-01 | 81.2% | 48.3% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 19.0 | 2.67e-01 | 74.0% | 70.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025263 | 6055.1.1.35 ↗ | extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › RIFIN | 0.65 | 51.0 | 4.55e-01 | 81.8% | 80.0% |
| 3265214 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.63 | 37.0 | 4.34e-01 | 74.7% | 79.1% |
| 4671784 | 3755.3.1.310 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA | 0.63 | 43.0 | 4.87e-01 | 82.5% | 90.0% |
| 3976126 | 1079.1.1.1 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD | 0.61 | 31.0 | 2.74e-01 | 85.1% | 33.5% |
| 4271212 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.60 | 40.0 | 4.43e-01 | 70.8% | 83.7% |
| 3786162 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 31.0 | 3.98e-01 | 74.7% | 84.2% |
| 4025452 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.58 | 35.0 | 3.97e-01 | 74.0% | 79.1% |
| 3473420 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 44.0 | 3.90e-01 | 79.2% | 87.4% |
| 3867942 | 3755.3.1.303 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th | 0.54 | 42.0 | 3.56e-01 | 81.2% | 52.3% |
| 5020161 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.54 | 41.0 | 4.03e-01 | 78.6% | 95.1% |
| 3413217 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 34.0 | 3.92e-01 | 77.9% | 88.7% |
| 3731029 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 27.0 | 2.92e-01 | 77.3% | 58.5% |
| 3757451 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.51 | 38.0 | 3.80e-01 | 83.8% | 74.4% |
| 4944680 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 2.59e-01 | 83.8% | 24.4% |
D2
high
residues 352-425
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cfaA01 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 41.0 | 3.42e-01 | 75.7% | 88.9% |
| 3ik4B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 46.0 | 4.04e-01 | 100.0% | 92.4% |
| 7cijA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 43.0 | 2.90e-01 | 100.0% | 69.9% |
| 4p1wA00 | 1.10.10.2570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 36.0 | 3.72e-01 | 75.7% | 81.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3290397 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 43.0 | 3.51e-01 | 81.1% | 95.0% |
| 4589356 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.57 | 43.0 | 3.40e-01 | 83.8% | 38.8% |
| 4935125 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.56 | 48.0 | 4.68e-01 | 100.0% | 89.4% |
| 2872285 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.56 | 41.0 | 3.81e-01 | 100.0% | 59.0% |
| 3364428 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.56 | 39.0 | 2.82e-01 | 74.3% | 91.4% |
| 4424957 | 3804.1.1.0 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain | 0.54 | 40.0 | 3.10e-01 | 82.4% | 38.3% |
| 3782355 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 46.0 | 2.95e-01 | 100.0% | 22.7% |
| 3724650 | 376.1.1.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ | 0.51 | 43.0 | 3.70e-01 | 97.3% | 77.6% |
| 4963604 | 108.4.1.1 ↗ | alpha arrays › EF-hand › Hypothetical protein MTH865 › Hypothetical protein MTH865 › MTH865 | 0.51 | 35.0 | 3.49e-01 | 74.3% | 70.0% |
| 3722742 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.51 | 35.0 | 2.85e-01 | 74.3% | 87.7% |
D3
medium
residues 1-81
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13240.12 best | Zn_Ribbon_1 | 25.9 | 8.50e-06 | 28.4% | 100.0% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.82 | 44.0 | 5.31e-01 | 87.7% | 78.2% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.70 | 44.0 | 5.23e-01 | 90.1% | 92.7% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 35.0 | 4.07e-01 | 77.8% | 70.2% |
| 3b08E00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.64 | 33.0 | 3.76e-01 | 84.0% | 66.1% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 40.0 | 4.45e-01 | 84.0% | 79.1% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 34.0 | 4.03e-01 | 87.7% | 89.1% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.57 | 36.0 | 3.77e-01 | 80.2% | 71.2% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.55 | 30.0 | 3.14e-01 | 77.8% | 53.2% |
| 1izcA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 40.0 | 2.76e-01 | 85.2% | 89.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503071 | 632.2.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA | 0.69 | 43.0 | 5.10e-01 | 86.4% | 92.9% |
| 3434118 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 37.0 | 4.16e-01 | 76.5% | 71.7% |
| 5001687 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.64 | 42.0 | 4.74e-01 | 91.4% | 87.3% |
| 3168080 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.63 | 50.0 | 2.89e-01 | 86.4% | 13.9% |
| 3683595 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.62 | 37.0 | 2.41e-01 | 80.2% | 12.9% |
| 3789508 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.55 | 43.0 | 4.59e-01 | 90.1% | 95.7% |
| 3630104 | 192.24.1.6 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.53 | 42.0 | 2.75e-01 | 88.9% | 40.0% |
| 3601822 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 45.0 | 4.34e-01 | 95.1% | 90.0% |
| 3640926 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.50 | 34.0 | 2.18e-01 | 75.3% | 14.6% |
| 3895601 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.50 | 45.0 | 4.31e-01 | 98.8% | 86.3% |