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IMGVR_UViG_3300005401_000094-3300005401-Ga0066857_100040105
Arc-VirIMGVR_UViG_3300005401_000094-3300005401-Ga0066857_100040105
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-140
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01873.24 best | eIF-5_eIF-2B | 104.3 | 5.40e-30 | 97.0% | 83.8% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9hA01 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.89 | 66.0 | 6.38e-01 | 77.2% | 74.3% |
| 6swc801 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.82 | 69.0 | 6.63e-01 | 91.1% | 80.2% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.66 | 43.0 | 5.08e-01 | 95.0% | 97.1% |
| 3pcoB04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.65 | 45.0 | 5.12e-01 | 72.3% | 97.3% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.64 | 45.0 | 5.06e-01 | 72.3% | 97.4% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.64 | 42.0 | 4.73e-01 | 72.3% | 88.3% |
| 5t5sA01 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.61 | 43.0 | 3.99e-01 | 76.2% | 57.4% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 39.0 | 4.20e-01 | 75.2% | 82.9% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 42.0 | 3.87e-01 | 77.2% | 58.3% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 4.08e-01 | 79.2% | 87.1% |
| 7uinD01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 40.0 | 3.44e-01 | 73.3% | 65.9% |
| 1z4hA01 | 1.10.238.160 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.56 | 33.0 | 4.03e-01 | 89.1% | 100.0% |
| 5xgbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 44.0 | 3.70e-01 | 89.1% | 54.2% |
| 1q36A01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.54 | 39.0 | 3.15e-01 | 76.2% | 65.4% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 38.0 | 3.89e-01 | 73.3% | 77.7% |
| 2ctkA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 41.0 | 4.10e-01 | 92.1% | 80.8% |
| 4r24B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 33.0 | 3.54e-01 | 100.0% | 72.9% |
| 1tuaA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 41.0 | 4.06e-01 | 93.1% | 79.0% |
| 3pjxA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 44.0 | 3.63e-01 | 92.1% | 57.5% |
| 2o0bA01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.52 | 38.0 | 3.04e-01 | 76.2% | 65.1% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.41e-01 | 75.2% | 72.9% |
| 3hvaA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 42.0 | 3.62e-01 | 91.1% | 63.0% |
| 2ctlA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 39.0 | 3.97e-01 | 93.1% | 88.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4431518 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.98 | 74.0 | 7.66e-01 | 77.2% | 82.1% |
| 5057754 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.98 | 70.0 | 6.94e-01 | 73.3% | 70.5% |
| 4975148 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.97 | 70.0 | 6.94e-01 | 74.3% | 71.4% |
| 5054618 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.97 | 68.0 | 7.71e-01 | 72.3% | 91.3% |
| 5000291 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.95 | 69.0 | 7.35e-01 | 74.3% | 83.3% |
| 5071512 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.95 | 71.0 | 7.32e-01 | 76.2% | 81.1% |
| 4948719 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.94 | 89.0 | 9.00e-01 | 98.0% | 99.0% |
| 3690887 | 101.1.9.87 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF26118 | 0.77 | 43.0 | 5.61e-01 | 86.1% | 100.0% |
| 4012195 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.68 | 49.0 | 4.48e-01 | 91.1% | 57.0% |
| 4973866 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 47.0 | 5.04e-01 | 72.3% | 89.4% |
| 4119705 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.66 | 47.0 | 4.22e-01 | 76.2% | 54.8% |
| 4049541 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.65 | 43.0 | 4.15e-01 | 89.1% | 58.3% |
| 4668511 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.65 | 45.0 | 4.91e-01 | 72.3% | 87.1% |
| 4229550 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.63 | 44.0 | 4.71e-01 | 72.3% | 88.2% |
| 4373306 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.63 | 44.0 | 4.92e-01 | 72.3% | 97.3% |
| 4055520 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.62 | 43.0 | 4.68e-01 | 72.3% | 87.1% |
| 3838420 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.61 | 40.0 | 4.21e-01 | 72.3% | 74.4% |
| 3218171 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 42.0 | 4.63e-01 | 72.3% | 97.3% |
| 4206669 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.57 | 37.0 | 4.29e-01 | 71.3% | 94.3% |
| 3766774 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.57 | 39.0 | 4.30e-01 | 73.3% | 94.7% |
| 3839207 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.55 | 41.0 | 4.38e-01 | 93.1% | 94.1% |
| 4995237 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.55 | 38.0 | 4.03e-01 | 85.1% | 81.1% |
| 3717644 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 36.0 | 4.09e-01 | 70.3% | 94.7% |
| 3174328 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 35.0 | 3.98e-01 | 71.3% | 100.0% |
| 3547175 | 327.11.2.21 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_2nd | 0.50 | 44.0 | 4.24e-01 | 96.0% | 100.0% |