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IMGVR_UViG_3300005405_000002-3300005405-Ga0074193_100068558

Arc-Vir

IMGVR_UViG_3300005405_000002-3300005405-Ga0074193_100068558

Identity

Kingdom:
archaea

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-40
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bwjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 53.0 3.44e-01 100.0% 30.1%
3lw7A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 49.0 3.26e-01 91.7% 31.2%
1b2rA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.63 46.0 3.20e-01 100.0% 26.3%
5ft9A02 3.40.50.11980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 47.0 3.07e-01 100.0% 18.9%
1gzhB01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.60 46.0 3.44e-01 86.1% 71.8%
6jqlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 49.0 3.22e-01 100.0% 43.3%
1w8iA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 43.0 3.06e-01 100.0% 67.5%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.26e-01 100.0% 43.0%
4jz8B00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 46.0 2.77e-01 97.2% 59.5%
3u4qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.67e-01 94.4% 47.4%
2zbwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.13e-01 100.0% 44.7%
4xrpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.88e-01 97.2% 51.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245914 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 55.0 3.19e-01 91.7% 73.1%
4997575 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 56.0 5.07e-01 100.0% 70.9%
4566012 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.68 54.0 3.50e-01 100.0% 28.5%
5052365 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.68 55.0 3.81e-01 100.0% 57.9%
3642354 103.1.1.54 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_NBR1_C 0.68 49.0 4.81e-01 88.9% 75.0%
3599926 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.67 53.0 3.30e-01 86.1% 96.6%
4970230 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.64 51.0 3.45e-01 100.0% 53.9%
4371931 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.63 51.0 3.31e-01 100.0% 29.2%
3754505 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 46.0 4.35e-01 88.9% 66.7%
3783754 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.62 46.0 3.23e-01 100.0% 31.1%
4990187 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.61 45.0 3.06e-01 94.4% 30.0%
4220958 2004.1.1.188 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 0.59 49.0 3.27e-01 100.0% 28.8%
4934897 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.59 45.0 3.11e-01 94.4% 23.0%
5069145 2004.1.1.188 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 0.58 48.0 3.10e-01 100.0% 26.3%
3482565 109.4.1.369 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 0.56 48.0 3.31e-01 100.0% 29.2%
5061987 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.56 46.0 3.26e-01 100.0% 27.4%
3221893 2004.1.1.232 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEXQc_Suv3 0.55 43.0 2.75e-01 94.4% 50.2%
3218481 109.4.1.369 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAPC1 0.54 46.0 3.12e-01 100.0% 34.5%
4932884 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 42.0 3.21e-01 94.4% 51.0%
3575648 2002.3.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_38N 0.52 46.0 2.68e-01 100.0% 20.0%
None — 0.51 42.0 2.76e-01 94.4% 66.7%