←Back to structures
IMGVR_UViG_3300005425_000042-3300005425-Ga0066859_100043441
Arc-VirIMGVR_UViG_3300005425_000042-3300005425-Ga0066859_100043441
Identity
- Kingdom:
- archaea
Quality
88.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-64
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.69 | 44.0 | 3.89e-01 | 80.3% | 47.6% |
| 5ibkB00 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 43.0 | 4.88e-01 | 96.7% | 95.7% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.60 | 48.0 | 3.72e-01 | 88.5% | 83.9% |
| 3h95A02 | 4.10.80.100 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.59 | 28.0 | 3.57e-01 | 70.5% | 83.3% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.59 | 33.0 | 2.91e-01 | 100.0% | 33.3% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 50.0 | 3.25e-01 | 93.4% | 57.8% |
| 3nfqB02 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.58 | 49.0 | 4.06e-01 | 93.4% | 90.7% |
| 1oy1C00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 37.0 | 2.63e-01 | 73.8% | 50.0% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 42.0 | 2.83e-01 | 85.2% | 86.9% |
| 3h95A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 47.0 | 3.65e-01 | 100.0% | 90.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 36.0 | 2.50e-01 | 72.1% | 95.4% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 40.0 | 2.62e-01 | 93.4% | 75.8% |
| 3vsjD00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.51 | 37.0 | 2.43e-01 | 78.7% | 23.1% |
| 5jy1A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 2.81e-01 | 96.7% | 58.6% |
| 1g5qA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.50 | 43.0 | 3.13e-01 | 96.7% | 73.6% |
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.50 | 37.0 | 3.15e-01 | 82.0% | 48.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3679746 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.76 | 59.0 | 4.19e-01 | 83.6% | 93.3% |
| 3668080 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.76 | 60.0 | 3.64e-01 | 85.2% | 38.9% |
| 3354458 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.75 | 60.0 | 3.97e-01 | 85.2% | 73.0% |
| 3376688 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.75 | 59.0 | 3.91e-01 | 85.2% | 69.4% |
| 3352401 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.75 | 59.0 | 3.51e-01 | 85.2% | 31.3% |
| 3677953 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.75 | 59.0 | 3.65e-01 | 85.2% | 45.3% |
| 3678331 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.75 | 58.0 | 3.79e-01 | 85.2% | 56.2% |
| 3816257 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.73 | 56.0 | 4.15e-01 | 83.6% | 97.4% |
| 3305378 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.71 | 55.0 | 3.37e-01 | 85.2% | 42.7% |
| 3644749 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.70 | 55.0 | 3.47e-01 | 85.2% | 47.0% |
| 3658634 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.70 | 54.0 | 3.75e-01 | 85.2% | 74.9% |
| 3824655 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.64 | 53.0 | 4.28e-01 | 88.5% | 88.2% |
| 3441614 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.62 | 38.0 | 2.69e-01 | 100.0% | 20.5% |
| 3459632 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.59 | 44.0 | 2.83e-01 | 83.6% | 30.2% |
| 3347296 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 45.0 | 3.19e-01 | 91.8% | 51.6% |
| 5060116 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 38.0 | 3.16e-01 | 83.6% | 41.9% |
| 3469845 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.52 | 43.0 | 3.06e-01 | 100.0% | 30.6% |
| 3744519 | 101.1.2.535 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25889 | 0.51 | 42.0 | 3.24e-01 | 96.7% | 77.5% |
| 3584644 | 304.9.1.59 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › CEBP_ZZ | 0.51 | 30.0 | 2.56e-01 | 98.4% | 30.9% |
| 3884681 | 292.2.1.10 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N | 0.51 | 40.0 | 3.64e-01 | 96.7% | 63.2% |
| 7745 | 4102.1.1.1 ↗ | a+b duplicates or obligate multimers › AF2331-like › AF2331-like › AF2331-like › AF2331-like | 0.51 | 29.0 | 2.61e-01 | 100.0% | 33.7% |
| 5028774 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 39.0 | 2.84e-01 | 86.9% | 45.4% |
| 3701672 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.50 | 37.0 | 2.81e-01 | 82.0% | 89.4% |
| 3843785 | 292.2.1.10 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N | 0.50 | 38.0 | 3.47e-01 | 95.1% | 58.2% |