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IMGVR_UViG_3300005427_000353-3300005427-Ga0066851_100059637

Arc-Vir

IMGVR_UViG_3300005427_000353-3300005427-Ga0066851_100059637

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-239
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00478.32 best IMPDH 199.8 8.60e-59 98.6% 59.7%
PF01070.25 FMN_dh 31.7 1.20e-07 55.0% 22.3%
PF01645.24 Glu_synthase 36.3 5.20e-09 54.1% 29.8%
D2 medium residues 249-284
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.86 76.0 4.17e-01 100.0% 8.2%
1mehA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.81 67.0 3.86e-01 100.0% 9.9%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.79 68.0 3.77e-01 100.0% 7.9%
5vqjA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.61 53.0 3.29e-01 100.0% 17.6%
2wb8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 49.0 3.29e-01 100.0% 72.0%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 46.0 3.39e-01 88.9% 65.8%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 48.0 3.36e-01 100.0% 31.6%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 46.0 2.97e-01 100.0% 21.2%
4wiaC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 3.03e-01 100.0% 81.9%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.59 45.0 3.16e-01 100.0% 34.0%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 2.94e-01 100.0% 20.1%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.58 44.0 3.20e-01 100.0% 27.2%
4q3lB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 40.0 2.47e-01 80.6% 68.6%
4zwnB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 47.0 2.83e-01 100.0% 21.9%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.58 46.0 2.93e-01 100.0% 17.5%
5lohB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 47.0 3.86e-01 100.0% 77.0%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.39e-01 100.0% 38.3%
3nffH00 6.20.250.70 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.57 48.0 3.46e-01 100.0% 52.3%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.67e-01 100.0% 21.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 44.0 3.59e-01 100.0% 41.7%
3fnbA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 2.80e-01 100.0% 26.5%
2jbwA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 2.79e-01 100.0% 23.4%
3oonA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.56 45.0 3.30e-01 100.0% 95.6%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 45.0 3.13e-01 100.0% 31.3%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.56 41.0 2.88e-01 100.0% 20.5%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 43.0 2.73e-01 100.0% 15.7%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.56 45.0 4.10e-01 100.0% 75.5%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.54 43.0 3.51e-01 100.0% 88.7%
4f0jA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 2.50e-01 100.0% 21.8%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 41.0 2.73e-01 100.0% 31.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.54 37.0 3.19e-01 100.0% 38.7%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.53 41.0 3.26e-01 97.2% 39.8%
4hxfB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.62e-01 100.0% 24.0%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.53 38.0 2.75e-01 97.2% 23.7%
1vrmA01 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.52 40.0 2.67e-01 100.0% 34.6%
6z30A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 38.0 2.72e-01 86.1% 100.0%
3wi7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.53e-01 100.0% 23.7%
1rieA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 40.0 2.90e-01 100.0% 41.7%
1q25A03 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 40.0 2.80e-01 100.0% 44.9%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 2.94e-01 97.2% 30.4%
2i3dB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.50e-01 100.0% 32.0%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589689 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.94 87.0 4.90e-01 100.0% 11.7%
4226134 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.94 86.0 4.88e-01 100.0% 11.6%
4157113 2002.1.1.280 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, NMO 0.94 86.0 4.87e-01 100.0% 11.7%
4151696 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.92 83.0 4.73e-01 100.0% 11.6%
3555073 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.91 81.0 4.61e-01 100.0% 13.1%
4173173 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.90 81.0 4.57e-01 100.0% 12.9%
None 0.89 78.0 4.36e-01 100.0% 15.5%
4967106 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.87 76.0 4.28e-01 100.0% 15.3%
None 0.87 76.0 4.27e-01 100.0% 14.3%
2034325 2002.1.1.280 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, NMO 0.87 75.0 4.28e-01 100.0% 10.1%
None 0.86 75.0 4.24e-01 100.0% 15.7%
4586408 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.85 73.0 4.10e-01 100.0% 13.4%
3595276 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.83 72.0 4.06e-01 100.0% 13.2%
3627326 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.82 71.0 4.04e-01 100.0% 12.1%
1117705 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.82 71.0 4.00e-01 100.0% 13.9%
4468948 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.81 70.0 3.93e-01 100.0% 15.6%
4421577 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.81 68.0 3.86e-01 100.0% 12.7%
5049660 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.81 69.0 3.97e-01 100.0% 13.6%
None 0.80 67.0 3.83e-01 100.0% 13.2%
3502375 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.71 59.0 5.50e-01 100.0% 75.6%
3450529 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.65 52.0 4.30e-01 100.0% 48.6%
3921742 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.62 53.0 3.23e-01 100.0% 33.0%
3805678 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.61 49.0 3.59e-01 100.0% 33.0%
3494434 3435.1.1.8 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DEPDC5_CTD 0.61 50.0 3.41e-01 97.2% 25.9%
3224914 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.61 43.0 3.22e-01 100.0% 26.1%
4003370 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.11e-01 100.0% 77.3%
3346599 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.60 48.0 3.77e-01 100.0% 38.7%
4203354 252.2.1.9 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 0.60 50.0 3.78e-01 100.0% 38.9%
4982179 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 47.0 3.58e-01 100.0% 37.1%
4949002 2003.1.5.64 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_9 0.60 51.0 3.08e-01 100.0% 17.2%
3268853 59.1.3.2 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_polI_A34 0.60 52.0 3.68e-01 100.0% 47.3%
3413788 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.59 46.0 3.24e-01 100.0% 32.1%
3775073 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 48.0 2.94e-01 100.0% 29.2%
3461499 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.58 49.0 3.50e-01 100.0% 30.0%
3727612 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 46.0 3.04e-01 100.0% 23.3%
5058449 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.57 42.0 3.24e-01 100.0% 55.7%
4929248 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.56 46.0 2.81e-01 100.0% 34.3%
3960071 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.56 43.0 2.81e-01 100.0% 19.1%
3740184 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 44.0 3.07e-01 100.0% 40.7%
3516502 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 43.0 3.67e-01 100.0% 50.0%
None 0.56 45.0 2.80e-01 100.0% 28.7%
4059572 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.56 47.0 3.44e-01 100.0% 55.5%
3958247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 2.75e-01 100.0% 17.1%
None 0.55 41.0 2.65e-01 100.0% 17.0%
3955730 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.55 41.0 2.51e-01 100.0% 11.1%
5062512 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 45.0 3.31e-01 100.0% 37.1%
1891870 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.54 40.0 3.33e-01 100.0% 40.5%
3713448 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.54 41.0 2.46e-01 100.0% 11.0%
4647060 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 43.0 2.69e-01 100.0% 25.0%
3704272 2004.1.1.175 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.54 39.0 2.36e-01 100.0% 10.1%
3628910 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.54 41.0 3.29e-01 97.2% 39.3%
3278049 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 43.0 2.86e-01 100.0% 31.9%
3385704 7579.1.1.92 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.53 43.0 2.71e-01 100.0% 27.6%
3962549 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 41.0 2.88e-01 100.0% 27.3%
5050083 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.53 40.0 2.92e-01 100.0% 68.1%
3377568 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.53 41.0 3.33e-01 100.0% 49.4%
4142447 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.52 40.0 3.18e-01 100.0% 61.0%
3262417 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.58e-01 100.0% 97.1%
4927132 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.51 40.0 3.09e-01 97.2% 41.1%
3231135 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 2.90e-01 100.0% 30.9%
3289895 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.50 36.0 2.26e-01 100.0% 11.2%