Back to structures

IMGVR_UViG_3300005428_000170-3300005428-Ga0066863_100039223

Arc-Vir

IMGVR_UViG_3300005428_000170-3300005428-Ga0066863_100039223

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-77
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 53.0 6.13e-01 77.3% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 55.0 6.09e-01 98.5% 94.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 52.0 5.09e-01 95.5% 64.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.64e-01 93.9% 83.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 6.05e-01 97.0% 98.1%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 56.0 3.53e-01 86.4% 35.6%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.69 47.0 5.06e-01 98.5% 82.5%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 54.0 3.42e-01 84.8% 41.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 4.99e-01 98.5% 75.0%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 58.0 4.75e-01 97.0% 73.6%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.67 57.0 4.71e-01 97.0% 90.1%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.65 54.0 4.51e-01 97.0% 73.4%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 45.0 3.72e-01 97.0% 42.0%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 49.0 3.08e-01 86.4% 52.6%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 55.0 4.59e-01 97.0% 81.1%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 51.0 4.10e-01 95.5% 95.0%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.61 49.0 5.15e-01 98.5% 100.0%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 3.94e-01 97.0% 55.5%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 3.99e-01 97.0% 58.3%
3kn6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 43.0 4.36e-01 77.3% 93.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 46.0 4.18e-01 90.9% 63.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.41e-01 98.5% 69.9%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.12e-01 98.5% 67.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 4.08e-01 83.3% 92.2%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 41.0 3.84e-01 74.2% 80.5%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 50.0 3.28e-01 100.0% 93.8%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.58 40.0 3.65e-01 74.2% 78.9%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 46.0 3.76e-01 95.5% 95.2%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 50.0 4.11e-01 98.5% 67.2%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 44.0 4.02e-01 86.4% 78.5%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 47.0 3.67e-01 95.5% 62.7%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 37.0 2.96e-01 86.4% 32.8%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.56 41.0 4.10e-01 81.8% 88.7%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 3.79e-01 83.3% 80.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.54e-01 87.9% 47.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 47.0 4.09e-01 98.5% 72.2%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 48.0 3.91e-01 100.0% 50.4%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 48.0 4.51e-01 100.0% 92.5%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 48.0 4.32e-01 100.0% 84.8%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.63e-01 97.0% 72.3%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 41.0 3.42e-01 87.9% 66.4%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.53 44.0 3.58e-01 95.5% 61.7%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 46.0 4.50e-01 100.0% 90.4%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.36e-01 90.9% 48.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3922679 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.84 57.0 6.44e-01 92.4% 92.0%
3414167 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 57.0 3.93e-01 95.5% 23.4%
4075769 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.81 57.0 6.24e-01 97.0% 89.1%
3389175 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 55.0 4.92e-01 95.5% 53.3%
3199259 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.78 56.0 5.72e-01 98.5% 76.9%
3797162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 53.0 4.80e-01 97.0% 52.2%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.77 55.0 4.99e-01 98.5% 57.6%
4585317 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 50.0 5.40e-01 95.5% 80.0%
3504417 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 54.0 4.84e-01 95.5% 54.4%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 57.0 3.35e-01 93.9% 11.3%
3924213 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 53.0 4.67e-01 95.5% 50.5%
3584364 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 54.0 6.07e-01 98.5% 100.0%
3492016 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 55.0 4.90e-01 95.5% 55.6%
4890270 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 54.0 5.86e-01 97.0% 92.6%
3798859 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 54.0 4.83e-01 95.5% 55.6%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.74 55.0 4.07e-01 100.0% 31.5%
3795223 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 4.96e-01 98.5% 60.0%
3672445 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 4.24e-01 98.5% 36.6%
3485965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.43e-01 97.0% 81.7%
3525406 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.73 53.0 4.42e-01 95.5% 45.5%
3259547 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.20e-01 98.5% 42.6%
4317035 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 52.0 4.77e-01 95.5% 60.0%
3375457 4.1.1.159 beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 0.70 53.0 5.15e-01 84.8% 98.7%
3189324 375.1.1.319 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 0.69 52.0 5.15e-01 81.8% 100.0%
3376441 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.69 53.0 3.34e-01 83.3% 42.2%
3632911 243.3.1.49 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Saf4_Yju2 0.68 54.0 5.07e-01 89.4% 90.6%
3987498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.60e-01 98.5% 61.2%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.56e-01 98.5% 60.0%
4342741 243.19.1.3 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › XkdV_N 0.67 53.0 4.86e-01 86.4% 89.4%
4059006 9.9.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.66 57.0 4.65e-01 97.0% 100.0%
4940664 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.66 55.0 5.12e-01 93.9% 74.1%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 48.0 4.86e-01 98.5% 80.0%
3492557 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 51.0 4.45e-01 95.5% 56.0%
5077007 2004.1.1.129 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zot 0.64 45.0 3.16e-01 74.2% 99.5%
3405627 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.71e-01 98.5% 64.2%
4102120 220.1.1.190 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 0.63 52.0 4.38e-01 97.0% 79.2%
3230082 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 55.0 4.77e-01 97.0% 82.0%
4978135 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 49.0 3.82e-01 86.4% 42.1%
5052666 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.61 49.0 4.49e-01 92.4% 68.1%
547 4.1.1.49 beta barrels › SH3 › SH3 › SH3 › KorB_C 0.61 43.0 4.54e-01 98.5% 90.7%
None 0.61 56.0 3.08e-01 100.0% 91.4%
3669494 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 53.0 3.98e-01 95.5% 86.7%
4003998 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.60 48.0 3.95e-01 92.4% 46.9%
3323488 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 45.0 2.98e-01 84.8% 30.3%
4949939 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 3.65e-01 86.4% 44.1%
1833882 9.4.1.3 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.59 46.0 4.27e-01 90.9% 67.7%
3227319 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 53.0 4.37e-01 98.5% 71.3%
4927100 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.59 42.0 3.81e-01 74.2% 67.8%
4927532 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.59 51.0 4.21e-01 100.0% 93.6%
3763497 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 50.0 4.83e-01 98.5% 88.0%
3997090 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 49.0 4.11e-01 98.5% 69.6%
2487568 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 49.0 4.06e-01 98.5% 67.8%
3594326 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.56 46.0 4.37e-01 92.4% 81.2%
5044412 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 43.0 3.09e-01 90.9% 82.0%
3230503 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 43.0 3.18e-01 86.4% 46.3%
4681650 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 47.0 3.53e-01 97.0% 48.6%
4493566 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 48.0 4.03e-01 98.5% 76.5%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.47e-01 97.0% 90.7%
3486223 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.79e-01 95.5% 25.1%
3964595 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.52 43.0 4.07e-01 95.5% 75.3%
4533388 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.52 44.0 3.09e-01 97.0% 28.0%
5002129 10.1.1.126 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF7308 0.52 44.0 3.28e-01 100.0% 92.6%
3524963 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.51 44.0 2.80e-01 97.0% 20.0%