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IMGVR_UViG_3300005429_000212-3300005429-Ga0066846_100059621

Arc-Vir

IMGVR_UViG_3300005429_000212-3300005429-Ga0066846_100059621

Identity

Kingdom:
archaea

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.62 30.0 2.93e-01 77.8% 40.8%
3lovA02 3.90.660.20 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 0.59 42.0 2.96e-01 74.6% 82.2%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 39.0 2.48e-01 71.4% 92.5%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.56 37.0 4.25e-01 93.7% 95.6%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 46.0 3.34e-01 95.2% 95.4%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 47.0 3.19e-01 96.8% 86.3%
1knxE02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.14e-01 85.7% 82.9%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 31.0 3.38e-01 90.5% 73.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 37.0 3.08e-01 74.6% 84.9%
5cygB00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 41.0 2.75e-01 87.3% 36.4%
2yhaA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 3.02e-01 96.8% 91.3%
4jaqA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 38.0 2.94e-01 77.8% 35.9%
1c8iA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.51 36.0 2.73e-01 79.4% 34.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 34.0 2.83e-01 79.4% 40.6%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 42.0 2.75e-01 100.0% 69.5%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.51 42.0 2.96e-01 98.4% 86.9%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.72e-01 100.0% 88.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988587 102.1.2.18 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › OGG_N 0.60 47.0 3.21e-01 87.3% 59.8%
4856387 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 46.0 3.27e-01 88.9% 72.7%
3292915 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.58 45.0 2.76e-01 87.3% 27.5%
4094652 2004.1.2.3 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.56 44.0 3.24e-01 87.3% 81.7%
3377635 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.55 41.0 2.71e-01 100.0% 18.5%
3583046 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 34.0 3.61e-01 90.5% 70.9%
4366304 2004.1.2.3 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.54 39.0 3.02e-01 79.4% 89.0%
3277484 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 27.0 3.02e-01 84.1% 52.0%
3649366 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 35.0 3.18e-01 100.0% 50.6%
4929483 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 39.0 3.20e-01 79.4% 57.5%
4296144 2004.1.2.3 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › Hpr_kinase_C 0.53 39.0 3.01e-01 82.5% 88.7%
4024082 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 40.0 2.64e-01 87.3% 55.0%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 41.0 4.15e-01 92.1% 89.2%
5073677 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 26.0 2.80e-01 79.4% 45.5%
2754825 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 42.0 2.67e-01 96.8% 17.9%
3489007 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.52 41.0 2.68e-01 87.3% 77.9%
4211249 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 31.0 3.12e-01 79.4% 55.4%
3257763 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 42.0 2.62e-01 92.1% 97.7%
3641337 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.51 36.0 3.13e-01 74.6% 55.0%
4939413 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.51 27.0 3.02e-01 87.3% 52.0%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 33.0 2.69e-01 77.8% 35.8%