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IMGVR_UViG_3300005508_000101-3300005508-Ga0066868_100014117

Arc-Vir

IMGVR_UViG_3300005508_000101-3300005508-Ga0066868_100014117

Quality

87.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-85
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14090.13 best HTH_39 28.0 2.30e-06 82.3% 67.1%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 5.29e-01 82.3% 62.6%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 6.21e-01 83.5% 85.7%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 5.46e-01 82.3% 65.6%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 5.15e-01 82.3% 63.8%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 4.70e-01 82.3% 48.5%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.24e-01 82.3% 72.9%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 4.51e-01 82.3% 46.0%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.28e-01 88.6% 78.6%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.70e-01 82.3% 56.2%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.08e-01 81.0% 78.4%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.60e-01 82.3% 61.7%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.29e-01 82.3% 46.3%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.51e-01 82.3% 52.8%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.28e-01 88.6% 82.9%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.69e-01 82.3% 65.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.82e-01 82.3% 80.9%
2kpmA01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.63 46.0 4.78e-01 78.5% 100.0%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.77e-01 88.6% 94.5%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.36e-01 81.0% 78.6%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.47e-01 82.3% 88.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.59e-01 100.0% 69.2%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 29.0 3.20e-01 87.3% 64.9%
4lecA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 2.95e-01 88.6% 32.2%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 38.0 3.66e-01 82.3% 81.1%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.37e-01 73.4% 99.0%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.97e-01 82.3% 37.9%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 3.22e-01 70.9% 55.4%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.50 38.0 3.14e-01 86.1% 81.5%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 35.0 3.55e-01 74.7% 86.6%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965117 101.1.2.369 alpha arrays › HTH › HTH › winged helix domain › HTH_39 0.83 64.0 7.02e-01 81.0% 98.5%
4957195 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.81 59.0 5.36e-01 81.0% 58.1%
4947441 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 62.0 6.08e-01 82.3% 76.5%
4999154 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.79 61.0 5.94e-01 81.0% 76.5%
4998031 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.78 61.0 4.64e-01 82.3% 37.6%
164542 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 60.0 5.29e-01 82.3% 62.6%
4983992 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.78 61.0 4.77e-01 82.3% 41.9%
4927759 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.77 60.0 4.68e-01 82.3% 40.6%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 5.80e-01 82.3% 77.6%
5081199 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 57.0 4.57e-01 82.3% 43.3%
3944118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 5.42e-01 82.3% 72.2%
4456198 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 64.0 4.92e-01 100.0% 45.9%
3549847 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.72 55.0 3.51e-01 81.0% 21.1%
5041543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.72 55.0 4.52e-01 81.0% 46.4%
5022036 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 4.57e-01 81.0% 48.1%
4116764 101.1.2.840 alpha arrays › HTH › HTH › winged helix domain › PF29821 0.72 55.0 4.87e-01 82.3% 56.5%
5033035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 4.73e-01 81.0% 55.1%
2391543 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 54.0 4.06e-01 82.3% 37.1%
3413597 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.71 55.0 3.56e-01 83.5% 23.2%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 4.55e-01 82.3% 64.4%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.43e-01 82.3% 85.0%
4974447 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.63e-01 81.0% 54.2%
5062639 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.69 52.0 4.96e-01 82.3% 70.5%
3330041 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.68 50.0 4.01e-01 82.3% 40.0%
4957685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.14e-01 88.6% 72.6%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 61.0 4.71e-01 100.0% 84.7%
4438513 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.67 60.0 5.38e-01 100.0% 74.5%
5065252 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.22e-01 94.9% 73.0%
4478999 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.66 59.0 4.60e-01 100.0% 48.6%
5075111 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.66 59.0 4.86e-01 100.0% 59.0%
4646072 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.66 59.0 4.61e-01 100.0% 47.1%
5017942 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 60.0 5.56e-01 100.0% 80.0%
5003874 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 49.0 4.34e-01 81.0% 64.2%
3602713 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.66 49.0 4.08e-01 81.0% 67.6%
5025840 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.63e-01 82.3% 74.0%
4937951 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 59.0 5.44e-01 100.0% 81.0%
4966558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.90e-01 82.3% 80.0%
2640815 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 57.0 5.27e-01 100.0% 80.4%
5028348 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 58.0 4.35e-01 100.0% 42.1%
4998580 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.78e-01 82.3% 72.2%
4527101 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 57.0 4.58e-01 100.0% 51.9%
4401786 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 57.0 5.23e-01 100.0% 77.1%
3481547 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.65 57.0 4.67e-01 100.0% 70.0%
4970576 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.65 57.0 4.41e-01 100.0% 45.0%
5052081 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.39e-01 100.0% 46.7%
5031648 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.64 57.0 4.49e-01 100.0% 90.9%
4947925 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 57.0 4.52e-01 100.0% 50.3%
5070883 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 55.0 5.27e-01 97.5% 83.3%
4930596 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 56.0 4.39e-01 100.0% 47.6%
3931635 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 39.0 4.03e-01 70.9% 65.3%
5052491 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 56.0 4.25e-01 100.0% 52.6%
5011468 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 56.0 4.83e-01 100.0% 66.4%
4965874 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 56.0 4.72e-01 100.0% 62.7%
3604578 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.63 55.0 5.07e-01 100.0% 77.1%
5050784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.59e-01 82.3% 75.6%
4993652 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.62 54.0 4.28e-01 100.0% 45.7%
4014683 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.62 47.0 4.04e-01 82.3% 65.4%
3615475 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 50.0 4.11e-01 88.6% 75.2%
4561147 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.62 55.0 4.72e-01 100.0% 78.9%
4221024 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 4.10e-01 100.0% 56.1%
4466102 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.62 55.0 4.30e-01 100.0% 47.6%
4974744 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.62 54.0 4.18e-01 100.0% 44.0%
4985036 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 54.0 4.25e-01 100.0% 47.1%
5054122 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 55.0 4.38e-01 100.0% 50.6%
4950547 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 54.0 5.07e-01 98.7% 81.1%
5042462 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 54.0 4.25e-01 98.7% 49.1%
4645846 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.61 54.0 4.25e-01 100.0% 47.6%
3713148 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.19e-01 81.0% 65.3%
5007541 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 53.0 4.85e-01 100.0% 80.0%
3726634 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 38.0 3.80e-01 70.9% 62.5%
4344487 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 52.0 4.14e-01 100.0% 48.5%
4507638 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 51.0 4.08e-01 100.0% 48.5%
5055444 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 51.0 4.73e-01 97.5% 76.0%
3241661 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 38.0 3.91e-01 75.9% 72.0%
5030026 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 41.0 4.00e-01 82.3% 76.7%
4105022 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.54 41.0 3.96e-01 81.0% 90.0%
3590219 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.54 41.0 4.00e-01 84.8% 94.4%
4169399 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.53 36.0 3.67e-01 70.9% 69.6%
3486254 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 34.0 3.41e-01 70.9% 65.0%
3927592 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 34.0 2.94e-01 70.9% 42.3%
4373827 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.51 39.0 3.80e-01 82.3% 93.2%
3587356 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.50 38.0 3.67e-01 82.3% 93.3%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 35.0 3.36e-01 73.4% 83.2%
3587109 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.50 36.0 3.53e-01 77.2% 86.7%