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IMGVR_UViG_3300005509_000436-3300005509-Ga0066827_100049283
Arc-VirIMGVR_UViG_3300005509_000436-3300005509-Ga0066827_100049283
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-151
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00080__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01743.27 best | PolyA_pol | 59.1 | 8.40e-16 | 90.6% | 96.0% |
D2
high
residues 250-399
Domain cluster:
rep: FN667788.1__CBJ93864.1__CPT_0055__00055__D7-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01966.29 best | HD | 38.5 | 1.80e-09 | 92.0% | 86.2% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m1tA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.67 | 59.0 | 4.82e-01 | 94.0% | 54.6% |
| 1aa7A02 | 1.10.10.180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 | 0.63 | 33.0 | 4.26e-01 | 86.7% | 94.9% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.61 | 37.0 | 3.84e-01 | 98.7% | 62.5% |
| 3kh1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 54.0 | 4.93e-01 | 96.7% | 75.9% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 45.0 | 4.60e-01 | 100.0% | 89.0% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 28.0 | 3.81e-01 | 82.7% | 100.0% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.55 | 43.0 | 4.21e-01 | 96.0% | 76.2% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.55 | 41.0 | 4.30e-01 | 100.0% | 84.9% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.55 | 40.0 | 4.44e-01 | 96.0% | 100.0% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.54 | 29.0 | 2.92e-01 | 79.3% | 49.4% |
| 4ocqA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 46.0 | 3.97e-01 | 93.3% | 82.5% |
| 1n81A00 | 1.10.3030.10 | Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 | 0.53 | 42.0 | 3.94e-01 | 84.7% | 92.5% |
| 1dm1A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 43.0 | 4.40e-01 | 100.0% | 90.4% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 4.23e-01 | 100.0% | 90.7% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.52 | 31.0 | 3.51e-01 | 96.0% | 78.6% |
| 4g9qA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.51 | 45.0 | 3.89e-01 | 96.7% | 96.2% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 4.39e-01 | 100.0% | 93.2% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.51 | 30.0 | 3.33e-01 | 99.3% | 72.3% |
| 1jwnA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 38.0 | 3.94e-01 | 100.0% | 84.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938333 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 63.0 | 5.87e-01 | 91.3% | 74.6% |
| 5021425 | 2004.1.1.233 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3-like_C_2 | 0.65 | 60.0 | 3.85e-01 | 100.0% | 61.9% |
| 4993560 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.63 | 57.0 | 5.32e-01 | 96.7% | 83.2% |
| 3515154 | 5053.1.1.1 ↗ | alpha complex topology › Clc chloride channel › Clc chloride channel › Clc chloride channel › Voltage_CLC | 0.63 | 45.0 | 3.22e-01 | 72.7% | 89.3% |
| 3708827 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 38.0 | 3.71e-01 | 84.0% | 52.9% |
| 4934071 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.61 | 54.0 | 5.08e-01 | 94.7% | 81.7% |
| 3655226 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.60 | 33.0 | 3.52e-01 | 89.3% | 58.5% |
| 3719940 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.55 | 44.0 | 3.61e-01 | 86.7% | 96.1% |
| 3590877 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.52 | 37.0 | 3.19e-01 | 73.3% | 78.0% |
| 3671635 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.50 | 32.0 | 2.71e-01 | 76.7% | 36.6% |
D3
high
residues 410-455
Domain cluster:
rep: IMGVR_UViG_3300025078_001596-3300025078-Ga0208668_10023921__D173-218
D4
medium
residues 152-249
Domain cluster:
rep: FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00061__D135-233
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12627.13 best | PolyA_pol_RNAbd | 27.4 | 3.20e-06 | 59.2% | 78.1% |