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IMGVR_UViG_3300005521_000544-3300005521-Ga0066862_100041762
Arc-VirIMGVR_UViG_3300005521_000544-3300005521-Ga0066862_100041762
Identity
- Kingdom:
- archaea
Quality
93.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i1mB02 | 1.25.40.830 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 41.0 | 2.97e-01 | 85.7% | 22.4% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 56.0 | 4.84e-01 | 94.6% | 93.2% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.65 | 55.0 | 4.07e-01 | 94.6% | 37.1% |
| 3on7B00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.65 | 51.0 | 3.17e-01 | 83.9% | 22.3% |
| 4j5tA01 | 2.70.98.110 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycosyl hydrolase family 63, N-terminal domain | 0.64 | 53.0 | 3.35e-01 | 92.9% | 76.1% |
| 3bvxA02 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.62 | 54.0 | 4.21e-01 | 92.9% | 74.8% |
| 2nr9A00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.61 | 51.0 | 3.61e-01 | 98.2% | 58.3% |
| 4wz0A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 52.0 | 4.12e-01 | 94.6% | 74.3% |
| 1exzB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 44.0 | 3.26e-01 | 94.6% | 31.4% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.59 | 47.0 | 3.84e-01 | 92.9% | 46.3% |
| 3og5A01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 44.0 | 3.79e-01 | 89.3% | 52.9% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.58 | 49.0 | 4.08e-01 | 94.6% | 54.2% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.58 | 50.0 | 4.07e-01 | 94.6% | 54.9% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.57 | 43.0 | 3.90e-01 | 83.9% | 88.7% |
| 1i7dA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.54 | 42.0 | 3.14e-01 | 94.6% | 83.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3474334 | 109.4.1.1316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C | 0.67 | 54.0 | 3.16e-01 | 94.6% | 10.3% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.66 | 59.0 | 4.65e-01 | 96.4% | 49.1% |
| 4629785 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.66 | 59.0 | 3.66e-01 | 96.4% | 18.6% |
| 3602143 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.66 | 60.0 | 3.84e-01 | 100.0% | 22.9% |
| 1394838 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.65 | 55.0 | 4.07e-01 | 94.6% | 37.1% |
| 3309008 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.64 | 54.0 | 4.42e-01 | 94.6% | 55.2% |
| 3623411 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.64 | 57.0 | 4.73e-01 | 100.0% | 57.9% |
| 3750062 | 857.1.1.26 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › Dzip-like_N | 0.64 | 51.0 | 4.38e-01 | 85.7% | 91.8% |
| 5023516 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.64 | 58.0 | 3.73e-01 | 100.0% | 23.4% |
| 3770732 | 3922.1.1.275 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Dzip-like_N | 0.63 | 56.0 | 4.17e-01 | 100.0% | 60.0% |
| 4025622 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 49.0 | 4.44e-01 | 85.7% | 64.0% |
| 5064397 | 5086.1.1.231 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook | 0.62 | 56.0 | 3.83e-01 | 100.0% | 29.2% |
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.62 | 53.0 | 3.30e-01 | 94.6% | 18.5% |
| 3750846 | 4207.1.1.90 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Dzip-like_N | 0.61 | 55.0 | 4.10e-01 | 100.0% | 62.2% |
| 3236856 | 174.1.1.50 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807 | 0.61 | 54.0 | 3.80e-01 | 100.0% | 34.9% |
| 5029796 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 53.0 | 4.11e-01 | 100.0% | 45.0% |
| 5004297 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.58 | 45.0 | 3.82e-01 | 91.1% | 52.4% |
| 3848227 | 223.2.1.15 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin | 0.57 | 51.0 | 3.72e-01 | 100.0% | 80.7% |
| 4163118 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.57 | 42.0 | 2.67e-01 | 83.9% | 15.0% |
| 3924202 | 375.10.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 | 0.56 | 44.0 | 4.18e-01 | 83.9% | 100.0% |
| 4024810 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.56 | 47.0 | 4.63e-01 | 92.9% | 93.3% |
| 4883913 | 4028.1.1.1 ↗ | beta barrels › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Catalase | 0.56 | 35.0 | 3.58e-01 | 76.8% | 64.3% |
| 2161598 | 2484.1.1.62 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV | 0.55 | 44.0 | 2.89e-01 | 92.9% | 20.1% |
| 3622 | 4047.1.1.1 ↗ | alpha bundles › First alpha-helical domain in heme-dependent catalases › First alpha-helical domain in heme-dependent catalases › First alpha-helical domain in heme-dependent catalases › Catalase | 0.55 | 36.0 | 3.67e-01 | 82.1% | 67.9% |
| 3485048 | 7579.1.1.83 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lip_C | 0.53 | 44.0 | 2.70e-01 | 100.0% | 82.5% |