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IMGVR_UViG_3300005532_000131-3300005532-Ga0070739_1000759118

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300005532_000131-3300005532-Ga0070739_1000759118 ↗
Kingdom:: archaea

Quality

74.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m1mA03	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.68	48.0	3.84e-01	73.7%	93.6%
1u9pA00	1.10.1220.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like	0.65	50.0	4.26e-01	84.2%	92.7%
6n2nA01	3.40.920.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	0.64	53.0	3.91e-01	100.0%	92.1%
2pw9C02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.61	42.0	4.21e-01	93.0%	70.7%
2r18A02	1.10.8.880	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2	0.57	42.0	4.19e-01	80.7%	91.5%
2ld7B00	1.20.1160.11	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix	0.56	39.0	3.57e-01	70.2%	54.7%
2lf3A00	1.20.1280.220	Mainly Alpha › Up-down Bundle › Monooxygenase › Effector protein HopAB, BAK1-interacting domain	0.55	37.0	3.11e-01	73.7%	37.1%
1wx0A00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.55	42.0	2.87e-01	82.5%	39.8%
3h0dB02	1.10.1200.150	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain	0.55	42.0	3.75e-01	82.5%	71.6%
1gqiA03	3.90.1330.10	Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain	0.54	46.0	3.09e-01	98.2%	71.7%
1sjyA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.54	45.0	3.36e-01	94.7%	90.3%
1e29A00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.53	46.0	3.56e-01	100.0%	64.4%
4yibA01	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.52	44.0	3.17e-01	93.0%	92.4%
3oy2A01	3.40.50.11930	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	40.0	3.05e-01	93.0%	63.7%
6vg5A00	1.10.10.930	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	36.0	3.20e-01	98.2%	51.9%
2vzbB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	38.0	2.93e-01	89.5%	77.2%
1adoA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.51	44.0	2.70e-01	96.5%	27.8%
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.50	39.0	3.83e-01	89.5%	100.0%
4gpkF02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	45.0	2.93e-01	100.0%	32.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3702757	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	46.0	2.88e-01	86.0%	14.8%
184733	3640.1.1.1 ↗	alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp	0.64	43.0	3.27e-01	70.2%	30.7%
4408360	2005.1.1.2 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b	0.60	46.0	2.96e-01	86.0%	84.1%