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IMGVR_UViG_3300005551_000276-3300005551-Ga0066843_100036591
Arc-VirIMGVR_UViG_3300005551_000276-3300005551-Ga0066843_100036591
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-149
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04002.21 best | RadC | 83.8 | 1.30e-23 | 83.0% | 81.8% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.89 | 76.0 | 7.89e-01 | 93.3% | 94.4% |
| 2znrA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.73 | 68.0 | 6.14e-01 | 99.3% | 75.3% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.63 | 47.0 | 5.00e-01 | 80.0% | 89.7% |
| 2h3gX01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 39.0 | 4.69e-01 | 83.7% | 96.6% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.62 | 52.0 | 5.32e-01 | 100.0% | 96.1% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 53.0 | 5.22e-01 | 100.0% | 90.1% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 47.0 | 4.27e-01 | 81.5% | 93.3% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 27.0 | 3.80e-01 | 70.4% | 95.1% |
| 2zyrA02 | 2.60.40.2190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 31.0 | 3.66e-01 | 79.3% | 75.5% |
| 5dcaA08 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.57 | 31.0 | 3.46e-01 | 79.3% | 65.5% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 27.0 | 3.06e-01 | 77.8% | 55.6% |
| 4jqrA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.57 | 39.0 | 3.32e-01 | 71.1% | 58.1% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.56 | 47.0 | 4.19e-01 | 90.4% | 63.1% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 35.0 | 4.00e-01 | 71.1% | 84.3% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.54 | 46.0 | 3.96e-01 | 90.4% | 61.4% |
| 2w4lB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 44.0 | 4.27e-01 | 97.0% | 79.6% |
| 4dbrA02 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.52 | 36.0 | 2.96e-01 | 71.1% | 74.1% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 27.0 | 3.12e-01 | 89.6% | 68.5% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.52 | 42.0 | 3.60e-01 | 89.6% | 63.6% |
| 2j1vA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 36.0 | 3.62e-01 | 85.9% | 69.5% |
| 2q3xA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 36.0 | 3.62e-01 | 82.2% | 70.4% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.13e-01 | 78.5% | 69.3% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 31.0 | 3.54e-01 | 71.1% | 82.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4311602 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 79.0 | 8.30e-01 | 93.3% | 96.7% |
| 4270283 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.92 | 78.0 | 7.88e-01 | 93.3% | 88.7% |
| 4311623 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 77.0 | 7.74e-01 | 90.4% | 86.7% |
| 4329297 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 77.0 | 8.08e-01 | 91.9% | 94.4% |
| 4164704 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 78.0 | 7.84e-01 | 93.3% | 88.1% |
| 4007865 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 78.0 | 7.46e-01 | 93.3% | 79.3% |
| 4125527 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 77.0 | 7.70e-01 | 91.1% | 86.7% |
| 4280109 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.91 | 76.0 | 7.98e-01 | 91.1% | 93.6% |
| 3963998 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.90 | 77.0 | 7.90e-01 | 94.1% | 91.5% |
| 4363048 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.90 | 76.0 | 7.74e-01 | 91.1% | 90.0% |
| 3280482 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.90 | 74.0 | 7.88e-01 | 93.3% | 95.8% |
| 4435677 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.89 | 79.0 | 7.97e-01 | 96.3% | 92.5% |
| 4629743 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.89 | 76.0 | 7.67e-01 | 94.1% | 88.1% |
| 4224503 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.89 | 77.0 | 7.78e-01 | 94.1% | 90.2% |
| 4938024 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.88 | 74.0 | 7.89e-01 | 94.1% | 97.5% |
| 3952775 | 2492.1.1.35 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 | 0.79 | 67.0 | 6.41e-01 | 90.4% | 77.4% |
| 3959592 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.79 | 67.0 | 6.35e-01 | 90.4% | 77.4% |
| 3282710 | 2492.1.1.35 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 | 0.74 | 63.0 | 5.85e-01 | 90.4% | 77.6% |
| 3556061 | 2492.1.1.3 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB,PROCT | 0.72 | 66.0 | 5.18e-01 | 98.5% | 50.5% |
| 3943542 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.71 | 61.0 | 6.32e-01 | 94.8% | 97.6% |
| 3244649 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.66 | 36.0 | 4.33e-01 | 84.4% | 81.2% |
| 5050943 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 34.0 | 3.86e-01 | 79.3% | 69.0% |
| 4152762 | 2492.1.1.20 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 | 0.61 | 50.0 | 4.49e-01 | 87.4% | 95.8% |
| 5051724 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 30.0 | 3.43e-01 | 77.8% | 62.0% |
| 5043896 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 30.0 | 3.56e-01 | 79.3% | 67.8% |
| 2132899 | 2492.1.1.20 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 | 0.61 | 50.0 | 4.53e-01 | 87.4% | 99.5% |
| 3852864 | 2492.1.1.23 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 | 0.60 | 50.0 | 4.56e-01 | 87.4% | 99.4% |
| 3226169 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 31.0 | 3.30e-01 | 79.3% | 54.4% |
| 3728690 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.59 | 33.0 | 3.67e-01 | 78.5% | 69.5% |
| 3990927 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.59 | 28.0 | 3.41e-01 | 77.8% | 68.9% |
| 3240576 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.58 | 29.0 | 3.46e-01 | 77.8% | 70.0% |
| 5079471 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 30.0 | 3.38e-01 | 77.8% | 62.9% |
| 3414310 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 31.0 | 3.50e-01 | 79.3% | 65.7% |
| 4954555 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 40.0 | 3.92e-01 | 71.9% | 100.0% |
| 5000157 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 44.0 | 3.89e-01 | 91.1% | 55.0% |
| 3622671 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.57 | 28.0 | 3.29e-01 | 77.8% | 66.3% |
| 5010853 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 32.0 | 3.36e-01 | 78.5% | 63.3% |
| 4337308 | 10.37.1.0 ↗ | beta sandwiches › jelly-roll › TerD › TerD | 0.54 | 42.0 | 3.89e-01 | 80.7% | 84.0% |
| 3272524 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 35.0 | 3.75e-01 | 88.9% | 77.5% |
| 4427418 | 11.1.1.1229 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 | 0.52 | 30.0 | 3.57e-01 | 70.4% | 82.1% |
| 3220268 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 37.0 | 3.58e-01 | 85.2% | 66.0% |
| 3501933 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.51 | 27.0 | 3.02e-01 | 78.5% | 63.8% |
| 3398608 | 11.1.1.197 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RHD_dimer | 0.51 | 29.0 | 3.20e-01 | 80.0% | 66.4% |
| 4028150 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 35.0 | 3.81e-01 | 75.6% | 86.4% |
| 3933593 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 38.0 | 3.68e-01 | 78.5% | 73.3% |