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IMGVR_UViG_3300005551_000276-3300005551-Ga0066843_100036597

Arc-Vir

IMGVR_UViG_3300005551_000276-3300005551-Ga0066843_100036597

Identity

Kingdom:
archaea

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-126
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.70 41.0 3.31e-01 89.7% 30.0%
2qybA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.69 42.0 3.35e-01 92.3% 31.1%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 39.0 3.11e-01 92.3% 29.5%
6uv8A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 37.0 2.83e-01 85.9% 23.5%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.62 53.0 4.05e-01 93.6% 43.8%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 38.0 2.90e-01 100.0% 26.4%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.61 51.0 4.15e-01 96.2% 77.8%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 40.0 3.78e-01 93.6% 55.2%
5xbtA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.60 51.0 4.17e-01 94.9% 79.6%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.60 52.0 4.56e-01 100.0% 65.9%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 41.0 4.32e-01 93.6% 86.2%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.59 51.0 4.56e-01 100.0% 70.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 39.0 3.68e-01 93.6% 54.1%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.58 50.0 4.49e-01 100.0% 72.6%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 42.0 3.74e-01 97.4% 53.4%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 48.0 4.10e-01 100.0% 57.6%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 3.09e-01 71.8% 73.4%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.55 44.0 2.97e-01 92.3% 91.4%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 47.0 3.95e-01 98.7% 56.4%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 46.0 3.83e-01 100.0% 57.9%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 33.0 2.69e-01 96.2% 29.6%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 36.0 2.84e-01 71.8% 83.7%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.52 45.0 3.86e-01 100.0% 73.5%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.52 44.0 3.85e-01 98.7% 65.1%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 3.19e-01 80.8% 59.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2753438 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.67 36.0 2.95e-01 83.3% 28.2%
2832276 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.66 39.0 3.04e-01 92.3% 27.3%
1125575 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.62 35.0 2.79e-01 88.5% 26.1%
138468 886.1.1.3 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Cass2 0.61 51.0 4.15e-01 96.2% 77.8%
3600178 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 38.0 2.88e-01 91.0% 26.8%
3936822 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 40.0 4.21e-01 83.3% 80.0%
3584409 223.2.1.34 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.58 40.0 3.11e-01 71.8% 88.8%
5032291 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 46.0 2.74e-01 94.9% 12.9%
3519582 11.1.1.958 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7652 0.56 46.0 3.97e-01 88.5% 65.0%
4177678 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.56 30.0 2.23e-01 91.0% 19.0%
3838830 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.64e-01 75.6% 92.0%
3477039 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.53 44.0 3.81e-01 97.4% 59.3%
3701052 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 45.0 3.17e-01 100.0% 47.9%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 46.0 3.95e-01 100.0% 70.0%
4976645 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.53 42.0 3.60e-01 88.5% 53.9%
2940139 10.32.1.11 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › ANAPC10 0.53 44.0 3.36e-01 93.6% 85.7%
4878031 11.1.4.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VHL 0.52 40.0 3.69e-01 98.7% 63.4%
1117716 3680.1.1.1 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.52 44.0 3.85e-01 98.7% 65.1%
3611176 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 44.0 3.17e-01 100.0% 53.5%
5050115 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.51 32.0 3.18e-01 100.0% 57.6%
4233359 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 41.0 3.51e-01 92.3% 75.0%
1313975 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 39.0 3.19e-01 80.8% 59.9%
3248606 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.51 42.0 3.61e-01 97.4% 54.8%
4876714 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.51 42.0 3.11e-01 91.0% 99.0%
3926010 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 37.0 3.17e-01 78.2% 96.2%
3242250 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 36.0 3.28e-01 76.9% 94.7%
3722982 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.50 35.0 3.01e-01 74.4% 67.4%