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IMGVR_UViG_3300005573_000356-3300005573-Ga0078972_101108718

Arc-Vir

IMGVR_UViG_3300005573_000356-3300005573-Ga0078972_101108718

Identity

Kingdom:
archaea

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kelA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.91 67.0 7.09e-01 78.8% 87.0%
1b01A00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.90 65.0 7.03e-01 76.9% 90.7%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.87 63.0 5.07e-01 76.9% 41.7%
3qoqC00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.84 63.0 6.51e-01 80.8% 89.8%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 5.29e-01 75.0% 91.4%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 46.0 4.28e-01 73.1% 59.7%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 43.0 3.83e-01 75.0% 71.2%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.60 42.0 2.92e-01 75.0% 53.9%
5jhfA00 1.10.10.2570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 44.0 3.82e-01 80.8% 78.9%
7sf2A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 45.0 2.85e-01 90.4% 47.4%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.56 47.0 4.02e-01 100.0% 76.7%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 40.0 4.08e-01 78.8% 90.2%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.34e-01 96.2% 68.5%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 37.0 2.26e-01 75.0% 76.0%
1qlbA04 3.10.20.820 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 3.40e-01 90.4% 84.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2625223 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.93 68.0 6.71e-01 76.9% 72.7%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.93 65.0 6.39e-01 73.1% 70.9%
5076430 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.91 63.0 5.73e-01 71.2% 56.9%
4946062 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 64.0 6.58e-01 76.9% 82.0%
5012232 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 64.0 6.34e-01 76.9% 74.5%
5013590 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 61.0 6.53e-01 73.1% 95.6%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 62.0 6.14e-01 76.9% 72.7%
5050855 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.84 59.0 5.77e-01 73.1% 69.1%
162036 101.1.11.28 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › NikA-like 0.82 56.0 5.68e-01 71.2% 72.5%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 57.0 5.00e-01 73.1% 52.0%
5033202 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 59.0 4.87e-01 76.9% 46.7%
2455631 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.81 58.0 4.92e-01 75.0% 48.2%
3005818 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.81 55.0 5.19e-01 71.2% 75.8%
3951746 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.80 55.0 4.92e-01 73.1% 53.4%
3985544 101.1.11.65 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RepB-RCR_reg 0.80 68.0 6.72e-01 100.0% 87.3%
4980865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.74 61.0 5.27e-01 100.0% 58.7%
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.71 48.0 3.76e-01 71.2% 57.3%
3572003 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.68 53.0 3.89e-01 80.8% 45.0%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.66 49.0 3.86e-01 78.8% 57.3%
3621034 3978.1.1.2 ↗ alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_hydroxylase 0.64 54.0 3.23e-01 94.2% 69.6%
4561787 6146.2.1.1 ↗ a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C 0.63 46.0 3.81e-01 78.8% 58.9%
4915831 6146.2.1.1 ↗ a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C 0.62 43.0 3.76e-01 73.1% 70.1%
1844315 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.60 42.0 2.61e-01 75.0% 45.9%
3478184 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 52.0 4.07e-01 98.1% 62.0%
4211416 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.53 46.0 3.65e-01 100.0% 62.7%