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IMGVR_UViG_3300005573_001597-3300005573-Ga0078972_1000005945

Arc-Vir

IMGVR_UViG_3300005573_001597-3300005573-Ga0078972_1000005945

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.75 66.0 5.57e-01 100.0% 100.0%
1m5yA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.72 48.0 3.74e-01 70.2% 35.5%
4v19400 6.20.130.20 Special › Other non-globular › Ribosomal Protein L25; Chain P › Mitochondrial ribosomal protein L55 0.67 35.0 3.92e-01 80.7% 62.2%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.67 45.0 4.53e-01 70.2% 96.6%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.66 52.0 4.02e-01 87.7% 95.5%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 47.0 4.14e-01 80.7% 100.0%
1rifA01 3.30.780.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.59 48.0 4.23e-01 94.7% 77.8%
2y27B01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.59 48.0 3.10e-01 98.2% 64.6%
1gg3A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 45.0 4.11e-01 84.2% 100.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 45.0 3.85e-01 84.2% 96.8%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 3.90e-01 91.2% 79.8%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 3.88e-01 86.0% 97.9%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 3.92e-01 84.2% 83.7%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 3.86e-01 80.7% 100.0%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 42.0 3.70e-01 80.7% 100.0%
2wyqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.95e-01 84.2% 98.7%
3rt3B01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 42.0 3.91e-01 82.5% 98.7%
2jmkA00 3.30.420.600 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 0.56 43.0 3.57e-01 96.5% 44.5%
3bg2A02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.56 49.0 4.00e-01 100.0% 79.5%
2dzkA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 42.0 3.85e-01 82.5% 100.0%
1wh3A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 41.0 3.82e-01 78.9% 100.0%
7pyvC02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 40.0 3.78e-01 77.2% 100.0%
4b9kE00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.55 46.0 4.08e-01 100.0% 62.8%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.77e-01 80.7% 93.5%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.55 46.0 3.23e-01 100.0% 37.4%
4dbgA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.69e-01 80.7% 93.9%
1wghA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.66e-01 80.7% 98.8%
3lxfA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 40.0 3.35e-01 78.9% 99.0%
6jl3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 42.0 3.85e-01 82.5% 98.6%
2dajA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.51e-01 80.7% 79.1%
1wiaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.89e-01 82.5% 100.0%
2kmaA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.60e-01 80.7% 98.8%
3pz8C00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.54 40.0 3.62e-01 80.7% 98.8%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 44.0 3.50e-01 98.2% 75.6%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 41.0 3.84e-01 82.5% 100.0%
4lniJ01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.54 41.0 3.48e-01 87.7% 77.9%
3qc8B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 40.0 3.60e-01 80.7% 96.2%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.66e-01 87.7% 96.7%
4cxjA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 43.0 3.48e-01 100.0% 50.4%
2gbmA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.46e-01 78.9% 97.5%
7sbiB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 39.0 3.60e-01 80.7% 100.0%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 35.0 3.63e-01 70.2% 75.9%
4lmyA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.52 39.0 4.05e-01 82.5% 87.0%
3goeA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.47e-01 80.7% 91.3%
1ttnA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.52e-01 80.7% 97.3%
2zeqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 39.0 3.55e-01 84.2% 93.6%
2al3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 39.0 3.60e-01 86.0% 98.7%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 38.0 3.47e-01 82.5% 91.1%
3ih6E00 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 41.0 3.03e-01 98.2% 56.6%
1c9fA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 36.0 3.22e-01 78.9% 79.3%
1k8rB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 37.0 3.32e-01 80.7% 79.3%
1id0A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 42.0 3.20e-01 98.2% 97.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269558 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.68 49.0 2.97e-01 77.2% 16.6%
3176859 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 51.0 3.77e-01 100.0% 48.5%
3801804 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 3.94e-01 82.5% 87.8%
4995058 239.4.1.1 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.59 46.0 4.20e-01 87.7% 95.0%
3726879 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.59 50.0 3.75e-01 98.2% 74.2%
3367236 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.59 51.0 4.17e-01 100.0% 85.5%
3933556 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.59 51.0 4.08e-01 100.0% 87.5%
3431801 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 50.0 3.74e-01 100.0% 65.2%
3641905 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.58 51.0 3.79e-01 100.0% 64.0%
3730451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 45.0 4.09e-01 98.2% 61.3%
3993412 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 51.0 3.67e-01 100.0% 55.8%
3514946 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.58 45.0 3.64e-01 84.2% 69.5%
3378713 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.57 50.0 3.67e-01 100.0% 69.7%
3408743 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.56 44.0 4.05e-01 84.2% 100.0%
3420159 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.56 43.0 3.92e-01 82.5% 97.3%
3318836 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.56 48.0 3.45e-01 100.0% 55.6%
3704234 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 44.0 3.83e-01 84.2% 87.1%
3917807 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 44.0 4.02e-01 84.2% 100.0%
3645704 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 43.0 3.82e-01 82.5% 90.0%
3811785 226.1.1.26 a+b two layers › POZ domain › POZ domain › POZ domain › BTB-POZ_ANK-like 0.56 46.0 2.83e-01 100.0% 15.4%
4026915 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 41.0 3.88e-01 78.9% 100.0%
3753075 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 42.0 3.75e-01 82.5% 96.5%
3997558 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 42.0 3.74e-01 80.7% 87.5%
3421753 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.55 47.0 3.49e-01 100.0% 61.3%
4243425 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 42.0 3.90e-01 82.5% 100.0%
3785044 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 43.0 3.96e-01 84.2% 100.0%
3255698 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.55 42.0 3.77e-01 82.5% 90.0%
3889863 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 43.0 3.51e-01 91.2% 75.8%
3722394 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.55 42.0 3.88e-01 84.2% 100.0%
3720991 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.55 41.0 3.81e-01 82.5% 94.7%
3392785 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 47.0 3.69e-01 100.0% 76.0%
4254802 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 44.0 2.84e-01 94.7% 87.3%
3258716 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 43.0 3.77e-01 89.5% 94.4%
3261640 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.54 41.0 3.79e-01 82.5% 97.3%
3200487 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 45.0 3.62e-01 100.0% 50.8%
3602046 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 41.0 3.29e-01 82.5% 94.8%
3388746 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.54 40.0 3.78e-01 80.7% 100.0%
3959051 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.54 39.0 2.89e-01 84.2% 44.3%
3408157 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.53 40.0 3.73e-01 82.5% 97.3%
3677941 226.1.1.2 a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.53 44.0 3.41e-01 98.2% 71.7%
3215153 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 45.0 3.64e-01 100.0% 55.8%
3326708 226.1.1.3 a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.53 44.0 3.40e-01 98.2% 71.7%
3193777 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.53 44.0 3.11e-01 100.0% 52.7%
3708203 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 39.0 3.55e-01 80.7% 97.5%
2753368 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 40.0 4.23e-01 86.0% 98.0%
3515521 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 39.0 3.59e-01 80.7% 100.0%
4952589 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.52 39.0 3.89e-01 80.7% 95.0%
3562400 221.1.1.89 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.52 39.0 3.11e-01 80.7% 71.3%
3840218 221.1.1.89 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.52 40.0 3.04e-01 84.2% 57.8%
3909868 221.1.1.89 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Il2rg 0.52 40.0 3.13e-01 84.2% 65.0%
3960782 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 42.0 2.77e-01 100.0% 53.7%
3919173 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.51 40.0 3.58e-01 84.2% 98.8%
3962094 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 41.0 2.92e-01 93.0% 88.2%
3398736 226.1.1.5 a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.50 41.0 3.33e-01 100.0% 83.8%
3179895 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.50 40.0 3.14e-01 100.0% 60.1%
5059050 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.50 37.0 3.59e-01 80.7% 93.8%
6168 221.1.1.54 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ras_bdg_2 0.50 37.0 3.32e-01 80.7% 79.3%