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IMGVR_UViG_3300005573_001605-3300005573-Ga0078972_10058648

Arc-Vir

IMGVR_UViG_3300005573_001605-3300005573-Ga0078972_10058648

Quality

85.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-138
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.82 67.0 7.09e-01 100.0% 96.6%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.80 74.0 7.53e-01 99.3% 100.0%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.80 70.0 7.25e-01 99.3% 98.4%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.80 72.0 7.23e-01 100.0% 94.9%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.77 73.0 6.18e-01 100.0% 80.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.74 52.0 5.93e-01 98.5% 97.0%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.70 65.0 6.46e-01 100.0% 96.5%
2lfpA01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.69 62.0 6.18e-01 99.3% 94.1%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 46.0 4.90e-01 91.1% 78.4%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.68 49.0 5.31e-01 100.0% 89.4%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 45.0 4.80e-01 91.1% 78.6%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.66 31.0 3.36e-01 99.3% 50.0%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 38.0 4.25e-01 77.0% 72.4%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.65 39.0 4.58e-01 82.2% 85.1%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 40.0 4.43e-01 83.0% 76.6%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.64 38.0 4.43e-01 96.3% 83.0%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 41.0 4.39e-01 86.7% 73.9%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.63 40.0 4.44e-01 91.9% 80.2%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 4.06e-01 77.0% 66.4%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 41.0 4.47e-01 92.6% 81.5%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 42.0 4.60e-01 87.4% 85.0%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.62 38.0 4.33e-01 75.6% 83.0%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.61 39.0 4.44e-01 85.2% 86.7%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 56.0 4.45e-01 99.3% 79.9%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 56.0 4.37e-01 99.3% 80.1%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.60 48.0 3.58e-01 86.7% 44.1%
1sesA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 54.0 4.11e-01 100.0% 78.9%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.22e-01 83.7% 79.8%
3e10A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 51.0 4.81e-01 99.3% 77.7%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 47.0 3.18e-01 86.7% 68.8%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 53.0 4.56e-01 100.0% 96.2%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 53.0 4.16e-01 100.0% 92.7%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 37.0 4.39e-01 96.3% 98.9%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.56 42.0 4.10e-01 96.3% 69.7%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 51.0 4.94e-01 100.0% 96.1%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 51.0 4.06e-01 100.0% 99.6%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 39.0 3.84e-01 100.0% 66.9%
2qtpA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.55 39.0 3.87e-01 74.8% 100.0%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 49.0 4.23e-01 100.0% 78.8%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 27.0 3.26e-01 90.4% 72.3%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 31.0 3.51e-01 82.2% 75.3%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 47.0 4.09e-01 99.3% 80.6%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 35.0 3.69e-01 99.3% 75.2%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 22.0 2.86e-01 74.8% 67.5%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 4.05e-01 74.1% 96.9%
6lnhB01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 39.0 3.36e-01 82.2% 81.0%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.51 40.0 4.00e-01 91.9% 80.4%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.50e-01 75.6% 75.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957584 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.90 74.0 8.07e-01 99.3% 100.0%
5040945 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.85 81.0 7.77e-01 100.0% 94.7%
5004177 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.83 73.0 7.65e-01 99.3% 100.0%
4928893 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.82 77.0 7.55e-01 100.0% 97.9%
3966645 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.81 71.0 7.42e-01 97.8% 99.2%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.81 76.0 6.38e-01 100.0% 90.7%
2642577 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.80 74.0 7.44e-01 100.0% 97.8%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.80 72.0 7.29e-01 100.0% 96.3%
3941902 304.124.1.7 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Minor_capsid_3 0.80 71.0 7.35e-01 98.5% 100.0%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.80 69.0 7.20e-01 97.8% 99.2%
4034595 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.78 66.0 7.04e-01 98.5% 100.0%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.78 70.0 7.12e-01 100.0% 97.7%
5083619 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.78 73.0 7.15e-01 100.0% 98.6%
4291659 304.124.1.8 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 0.77 73.0 7.23e-01 99.3% 97.9%
3949263 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.76 58.0 6.49e-01 89.6% 100.0%
3970985 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.76 71.0 7.09e-01 100.0% 99.3%
4562028 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.74 56.0 5.48e-01 100.0% 73.8%
3589225 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 68.0 6.89e-01 100.0% 99.3%
5078308 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 69.0 6.93e-01 100.0% 99.3%
3606930 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.72 55.0 5.96e-01 100.0% 99.1%
4954550 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.71 55.0 5.92e-01 100.0% 94.8%
3725599 11.1.1.233 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.71 41.0 4.72e-01 87.4% 77.0%
4069303 304.153.1.1 a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain › ColG_sub 0.67 49.0 5.16e-01 100.0% 84.2%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.65 42.0 4.63e-01 88.1% 80.0%
4013561 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 41.0 4.24e-01 85.2% 67.2%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.63 50.0 5.39e-01 94.8% 97.4%
4136515 310.3.1.23 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.62 53.0 5.07e-01 100.0% 78.1%
5000855 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.61 57.0 4.08e-01 100.0% 78.1%
3977799 304.109.1.5 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › YecR 0.61 37.0 4.51e-01 85.9% 96.5%
4260089 212.1.1.33 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › REC102 0.60 41.0 3.29e-01 86.7% 36.5%
4941514 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.60 41.0 4.85e-01 87.4% 100.0%
3929879 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.59 43.0 4.09e-01 88.9% 62.2%
3314582 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.59 39.0 3.59e-01 77.0% 50.6%
None 0.58 53.0 4.24e-01 100.0% 78.1%
3701983 304.153.1.0 a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain 0.57 52.0 4.76e-01 100.0% 94.3%
327528 328.1.1.2 a+b two layers › IF3-like › AlbA-like › AlbA-like › SpoVS 0.57 37.0 4.39e-01 96.3% 98.9%
4941197 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 36.0 3.43e-01 76.3% 54.4%
3705145 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 50.0 4.57e-01 99.3% 93.3%
3210445 3685.1.1.1 a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.55 39.0 4.47e-01 91.9% 100.0%
3303879 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.55 42.0 3.47e-01 80.0% 71.7%
3582831 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.54 45.0 3.61e-01 88.9% 50.8%
3699878 12.1.1.94 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.54 44.0 4.55e-01 86.7% 92.7%
3510174 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 48.0 4.14e-01 98.5% 82.9%
3707804 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.53 44.0 4.17e-01 88.1% 73.8%
3230024 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.52 45.0 3.30e-01 96.3% 97.9%
4513159 312.1.1.5 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C 0.52 47.0 4.29e-01 96.3% 90.9%
3720671 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.52 38.0 3.46e-01 100.0% 57.2%
4491822 312.1.1.5 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C 0.51 46.0 3.89e-01 96.3% 90.8%
3496203 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.50 35.0 3.95e-01 94.8% 96.0%
3780384 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.50 38.0 3.28e-01 81.5% 52.4%