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IMGVR_UViG_3300005587_000006-3300005587-Ga0066654_100055785

Arc-Vir

IMGVR_UViG_3300005587_000006-3300005587-Ga0066654_100055785

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-90
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01243.28 best PNPOx_N 33.6 6.10e-08 95.4% 62.5%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.89 83.0 7.05e-01 100.0% 74.8%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.86 75.0 6.55e-01 98.9% 64.5%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.86 80.0 6.54e-01 100.0% 64.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.85 78.0 6.42e-01 100.0% 63.6%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.84 76.0 6.79e-01 100.0% 70.6%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.83 77.0 6.40e-01 100.0% 61.5%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.83 77.0 6.37e-01 100.0% 61.5%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.82 76.0 6.65e-01 100.0% 70.4%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.81 75.0 5.71e-01 100.0% 61.8%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.81 75.0 6.33e-01 100.0% 70.8%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.81 75.0 6.28e-01 100.0% 63.6%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.80 75.0 6.22e-01 100.0% 63.4%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.80 73.0 6.25e-01 100.0% 66.2%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.79 74.0 6.38e-01 100.0% 68.8%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.79 74.0 6.26e-01 100.0% 65.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.79 73.0 6.01e-01 100.0% 64.4%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.78 72.0 6.35e-01 100.0% 72.6%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.78 71.0 6.23e-01 100.0% 68.3%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.78 71.0 6.40e-01 100.0% 78.6%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.78 71.0 6.20e-01 100.0% 72.7%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.77 70.0 5.87e-01 100.0% 63.0%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.77 69.0 5.35e-01 100.0% 58.4%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.76 70.0 5.87e-01 100.0% 74.6%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.75 68.0 5.56e-01 100.0% 58.3%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.74 68.0 5.94e-01 100.0% 69.0%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.74 67.0 5.87e-01 100.0% 67.7%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 65.0 5.45e-01 100.0% 59.2%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 64.0 5.43e-01 100.0% 62.3%
2iusD01 3.30.980.40 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.60 39.0 3.75e-01 94.3% 58.2%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.57 39.0 3.07e-01 96.6% 33.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.54 28.0 3.76e-01 81.6% 93.8%
3f79E00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 37.0 2.79e-01 77.0% 89.4%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.34e-01 98.9% 61.9%
4jmdA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.51 43.0 3.24e-01 100.0% 74.7%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 37.0 2.46e-01 93.1% 17.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4926888 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.87 81.0 6.99e-01 100.0% 73.1%
3279487 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.84 78.0 6.54e-01 100.0% 70.0%
4987534 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.84 78.0 6.38e-01 100.0% 67.3%
3684553 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.84 78.0 5.87e-01 100.0% 48.2%
4026305 1.1.5.36 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.83 78.0 5.91e-01 100.0% 64.7%
4973387 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.83 77.0 6.47e-01 100.0% 72.9%
3342854 1.1.5.34 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.83 78.0 6.10e-01 100.0% 54.7%
5042925 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 78.0 6.43e-01 100.0% 75.9%
4961770 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.83 77.0 6.75e-01 100.0% 73.6%
3960558 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 72.0 6.26e-01 92.0% 74.4%
5049939 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.83 77.0 6.23e-01 100.0% 63.0%
4998991 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.83 77.0 6.44e-01 100.0% 75.0%
162092 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.83 77.0 6.58e-01 100.0% 67.2%
3953882 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.82 73.0 6.28e-01 95.4% 75.4%
4932075 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.82 76.0 6.56e-01 100.0% 67.7%
5041651 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 77.0 5.88e-01 100.0% 68.9%
3952438 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.82 76.0 6.39e-01 100.0% 69.1%
1866299 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.82 75.0 6.42e-01 100.0% 65.2%
3281573 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 70.0 5.96e-01 100.0% 59.3%
3289725 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 76.0 6.53e-01 100.0% 70.8%
3351247 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 68.0 5.84e-01 88.5% 83.1%
5028702 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 75.0 6.32e-01 100.0% 64.3%
3387649 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 75.0 6.39e-01 100.0% 65.9%
3278636 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 74.0 6.07e-01 100.0% 65.8%
5018578 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 74.0 6.36e-01 100.0% 65.4%
4400460 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 74.0 6.29e-01 100.0% 65.7%
4521524 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 75.0 6.27e-01 100.0% 65.0%
3284440 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 74.0 6.29e-01 100.0% 71.0%
3960580 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 74.0 6.11e-01 100.0% 67.3%
3286417 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 75.0 6.54e-01 100.0% 72.8%
4949072 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 75.0 6.19e-01 100.0% 60.7%
4999142 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 74.0 5.76e-01 100.0% 55.6%
3279334 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.81 74.0 6.38e-01 98.9% 73.1%
3290373 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.80 74.0 6.26e-01 100.0% 69.8%
3948318 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 74.0 5.60e-01 100.0% 45.1%
57 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 74.0 5.94e-01 100.0% 63.1%
3958940 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 74.0 6.15e-01 100.0% 61.4%
4929497 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 72.0 6.39e-01 96.6% 77.5%
4953373 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 74.0 6.32e-01 100.0% 66.2%
4008655 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 73.0 6.09e-01 100.0% 63.4%
4976717 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 72.0 6.15e-01 100.0% 63.0%
3636918 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 73.0 5.32e-01 100.0% 42.7%
4032831 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 73.0 6.24e-01 100.0% 66.7%
3604671 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.80 74.0 6.21e-01 100.0% 63.3%
3280029 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.79 73.0 6.25e-01 100.0% 68.1%
4988336 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.79 74.0 6.26e-01 100.0% 65.2%
4973411 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.79 72.0 6.11e-01 100.0% 63.0%
4949912 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.79 73.0 6.21e-01 100.0% 68.1%
4963267 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 71.0 5.94e-01 100.0% 66.9%
4015385 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.78 72.0 5.44e-01 100.0% 46.7%
144904 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.78 70.0 6.16e-01 100.0% 68.0%
3286515 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.78 71.0 6.01e-01 100.0% 70.0%
3953862 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 71.0 5.72e-01 100.0% 65.6%
3729846 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 71.0 5.26e-01 100.0% 46.9%
3385776 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 71.0 6.09e-01 100.0% 65.2%
4304742 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.77 71.0 5.37e-01 100.0% 61.6%
4974640 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 70.0 5.97e-01 100.0% 65.5%
5049720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 71.0 6.13e-01 100.0% 69.2%
3287194 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.77 71.0 5.56e-01 100.0% 51.4%
195822 1.1.5.36 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.74 68.0 5.50e-01 100.0% 58.1%
3953421 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.70 64.0 5.39e-01 100.0% 65.7%
4478921 304.156.1.1 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › FtsK_alpha 0.57 38.0 3.90e-01 95.4% 70.6%
4237486 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.54 39.0 3.28e-01 100.0% 43.2%
3276558 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 47.0 3.27e-01 98.9% 69.4%
3182154 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.53 46.0 3.43e-01 95.4% 49.5%
3738330 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.52 40.0 3.44e-01 100.0% 51.4%
4205520 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 37.0 3.66e-01 100.0% 71.1%