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IMGVR_UViG_3300005607_000407-3300005607-Ga0070740_1000028392

Arc-Vir

IMGVR_UViG_3300005607_000407-3300005607-Ga0070740_1000028392

Quality

72.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-125
PDB
D2 high residues 151-169_190-393
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.78 74.0 6.62e-01 100.0% 89.9%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.70 29.0 3.72e-01 91.0% 63.8%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.69 28.0 3.60e-01 91.9% 61.0%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.67 22.0 3.46e-01 83.9% 71.1%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 20.0 3.23e-01 89.7% 65.9%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.66 42.0 5.25e-01 96.0% 97.9%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.66 30.0 4.45e-01 97.8% 97.9%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 21.0 3.27e-01 92.4% 67.8%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 21.0 3.17e-01 92.4% 64.2%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 21.0 3.03e-01 89.7% 59.6%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.64 22.0 3.80e-01 89.7% 97.1%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 21.0 3.28e-01 89.7% 71.1%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 22.0 3.12e-01 90.6% 65.1%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 21.0 2.93e-01 90.1% 60.9%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 20.0 3.02e-01 94.2% 68.9%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 25.0 3.43e-01 90.1% 77.6%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 25.0 2.70e-01 92.4% 44.0%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 17.0 2.77e-01 87.0% 64.2%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 21.0 2.97e-01 92.4% 63.8%
1vr4E00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.58 26.0 3.92e-01 95.5% 100.0%
3dktA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.58 36.0 4.08e-01 95.5% 80.5%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.57 24.0 3.10e-01 93.3% 66.4%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.57 26.0 3.17e-01 88.3% 63.6%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 22.0 2.94e-01 93.7% 65.2%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 23.0 3.19e-01 89.2% 75.0%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 20.0 2.65e-01 99.1% 58.4%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 19.0 2.65e-01 87.0% 62.2%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.51 24.0 2.79e-01 94.6% 57.2%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.50 21.0 3.28e-01 91.5% 98.8%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.50 22.0 2.33e-01 91.5% 39.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583655 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.87 84.0 7.26e-01 100.0% 90.0%
3110786 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.84 80.0 6.77e-01 100.0% 85.2%
2988313 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.84 81.0 7.44e-01 100.0% 89.3%
3075730 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.83 79.0 6.84e-01 100.0% 86.9%
2842229 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.82 79.0 6.50e-01 100.0% 90.4%
2651377 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.82 79.0 7.02e-01 100.0% 87.9%
4988094 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.82 78.0 7.40e-01 100.0% 89.8%
4929755 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.81 78.0 7.20e-01 100.0% 86.9%
3946670 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 78.0 7.21e-01 100.0% 86.2%
3942344 2485.3.1.19 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.81 78.0 6.90e-01 100.0% 88.4%
2995325 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.81 78.0 6.41e-01 100.0% 88.9%
5080806 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.81 77.0 7.03e-01 100.0% 97.9%
3090875 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.81 77.0 6.83e-01 100.0% 92.5%
3963274 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.81 77.0 6.35e-01 99.1% 98.9%
3513770 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.81 77.0 6.90e-01 100.0% 92.3%
194954 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.81 74.0 7.29e-01 100.0% 90.7%
3944238 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.81 77.0 7.02e-01 100.0% 96.5%
2640765 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.81 76.0 6.42e-01 100.0% 92.6%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.80 77.0 6.90e-01 100.0% 90.5%
4890673 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.80 77.0 6.47e-01 100.0% 90.3%
4241362 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.80 77.0 6.88e-01 100.0% 89.8%
3088027 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.80 77.0 7.14e-01 100.0% 89.6%
5081487 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.80 76.0 7.02e-01 100.0% 98.2%
5082710 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.79 76.0 6.52e-01 100.0% 90.3%
5041371 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.79 76.0 6.68e-01 100.0% 93.9%
2538948 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 76.0 6.76e-01 100.0% 88.3%
2841997 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.79 76.0 6.26e-01 100.0% 91.2%
2989363 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 75.0 6.61e-01 100.0% 89.9%
2989289 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 75.0 6.50e-01 100.0% 88.9%
2989372 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 75.0 6.65e-01 100.0% 89.1%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.78 75.0 6.68e-01 100.0% 85.3%
2989506 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 75.0 6.71e-01 100.0% 94.2%
2989340 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 74.0 6.52e-01 100.0% 88.9%
333200 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.78 74.0 6.61e-01 100.0% 89.8%
5083051 2485.3.1.12 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.78 75.0 6.74e-01 100.0% 91.4%
3501742 2485.3.1.21 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP 0.78 74.0 6.56e-01 100.0% 92.6%
2995627 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.78 74.0 6.62e-01 100.0% 89.3%
2639625 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.78 74.0 6.81e-01 100.0% 87.5%
3949155 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.78 74.0 6.96e-01 100.0% 89.4%
3952452 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 74.0 6.68e-01 100.0% 86.7%
4884207 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.77 73.0 6.64e-01 100.0% 89.7%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.77 74.0 6.39e-01 100.0% 91.4%
4955362 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.77 72.0 7.10e-01 100.0% 93.2%
4991535 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.77 72.0 6.97e-01 100.0% 89.4%
5011908 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.76 69.0 6.71e-01 100.0% 87.5%
3977985 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.76 73.0 6.15e-01 100.0% 74.7%
5081698 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.76 72.0 6.41e-01 100.0% 90.2%
4995674 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.76 72.0 6.80e-01 100.0% 85.7%
2899245 2485.3.1.10 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.76 72.0 6.09e-01 100.0% 90.2%
2968064 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.75 71.0 6.01e-01 100.0% 91.6%
2546181 2485.3.1.13 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like 0.74 71.0 6.15e-01 100.0% 89.5%
4031028 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.74 71.0 6.50e-01 100.0% 81.4%
3603036 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.74 71.0 6.72e-01 100.0% 90.6%
2806362 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.74 70.0 6.59e-01 100.0% 86.4%
4954548 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.73 69.0 6.41e-01 100.0% 92.4%
3587769 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.72 69.0 6.22e-01 100.0% 88.3%
5083777 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.72 68.0 6.11e-01 100.0% 86.0%
3977525 2485.3.1.4 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 0.71 67.0 5.81e-01 100.0% 86.2%
2806361 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.71 67.0 6.37e-01 100.0% 88.5%
3588084 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 67.0 5.98e-01 100.0% 86.9%
3492449 256.1.1.9 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › YbjQ_3 0.71 26.0 4.48e-01 95.1% 100.0%
2724409 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.70 66.0 6.21e-01 100.0% 86.8%
3277785 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.69 66.0 6.20e-01 100.0% 87.3%
2831773 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.69 65.0 6.10e-01 100.0% 86.5%
2553816 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.67 63.0 5.95e-01 100.0% 86.8%
3610546 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.65 33.0 4.62e-01 97.3% 100.0%
3952856 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 20.0 3.03e-01 86.5% 59.0%
3164700 2485.3.1.15 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT 0.65 51.0 4.70e-01 100.0% 64.0%
5013821 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.61 27.0 3.62e-01 93.3% 76.7%
3602546 872.3.1.1 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.58 28.0 3.92e-01 96.4% 96.1%
3931456 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.57 27.0 3.03e-01 88.8% 53.5%
4462302 872.3.1.1 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.57 28.0 3.99e-01 95.1% 96.4%
4994093 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 23.0 2.64e-01 92.8% 45.9%