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IMGVR_UViG_3300005607_000421-3300005607-Ga0070740_100006109
Arc-VirIMGVR_UViG_3300005607_000421-3300005607-Ga0070740_100006109
Identity
- Kingdom:
- archaea
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-74
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.64 | 44.0 | 3.77e-01 | 98.5% | 45.8% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 43.0 | 3.88e-01 | 100.0% | 54.8% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 43.0 | 4.15e-01 | 95.5% | 68.0% |
| 3es5A02 | 1.20.272.60 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.59 | 50.0 | 4.16e-01 | 100.0% | 52.5% |
| 6bn3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 49.0 | 3.40e-01 | 98.5% | 97.8% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 40.0 | 3.58e-01 | 70.1% | 63.8% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.59 | 51.0 | 3.16e-01 | 100.0% | 35.4% |
| 1gxlA01 | 1.20.1060.20 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › | 0.56 | 50.0 | 4.18e-01 | 100.0% | 97.5% |
| 2r7rA02 | 1.20.120.1390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 42.0 | 3.28e-01 | 100.0% | 35.9% |
| 3ldtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.56 | 50.0 | 3.89e-01 | 100.0% | 98.6% |
| 2yv9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 40.0 | 3.16e-01 | 76.1% | 53.7% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 50.0 | 4.43e-01 | 100.0% | 93.6% |
| 5hw3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 44.0 | 3.04e-01 | 92.5% | 43.1% |
| 1aowA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.53 | 31.0 | 3.07e-01 | 100.0% | 52.7% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 38.0 | 3.67e-01 | 100.0% | 67.9% |
| 1yewB00 | 1.20.1450.10 | Mainly Alpha › Up-down Bundle › particulate methane monooxygenase, chain B › Ammonia/particulate methane monooxygenase, subunit A | 0.51 | 43.0 | 3.04e-01 | 100.0% | 31.9% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 35.0 | 3.83e-01 | 97.0% | 100.0% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 43.0 | 3.80e-01 | 100.0% | 64.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8098 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 40.0 | 3.58e-01 | 70.1% | 63.8% |
| 4204405 | 170.1.1.33 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › SAM_GIDA_C | 0.57 | 38.0 | 3.80e-01 | 77.6% | 65.7% |
| 3401601 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.57 | 48.0 | 3.10e-01 | 100.0% | 51.5% |
| 4666900 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 52.0 | 4.15e-01 | 100.0% | 59.2% |
| 4271212 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 52.0 | 4.17e-01 | 100.0% | 71.5% |
| 139279 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 50.0 | 4.43e-01 | 100.0% | 93.6% |
| 4224821 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 50.0 | 4.12e-01 | 100.0% | 64.3% |
| 3379914 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.54 | 46.0 | 3.84e-01 | 97.0% | 82.5% |
| 3691694 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 49.0 | 3.95e-01 | 100.0% | 76.8% |
| 3268269 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.53 | 41.0 | 3.63e-01 | 85.1% | 66.0% |
| 3600453 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 44.0 | 2.54e-01 | 97.0% | 71.4% |
| 3285433 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.53 | 37.0 | 2.43e-01 | 74.6% | 69.0% |
| 3944712 | 101.1.9.40 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N | 0.52 | 39.0 | 3.50e-01 | 85.1% | 94.3% |
| 5052491 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 47.0 | 3.30e-01 | 97.0% | 41.1% |
| 3805761 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.52 | 39.0 | 3.74e-01 | 89.6% | 70.7% |