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IMGVR_UViG_3300005835_000030-3300005835-Ga0078910_10246821
Arc-VirIMGVR_UViG_3300005835_000030-3300005835-Ga0078910_10246821
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-102_164-184
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rniA01 | 3.30.720.160 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal | 0.70 | 54.0 | 5.61e-01 | 92.0% | 87.1% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.53 | 44.0 | 3.45e-01 | 94.7% | 90.3% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 39.0 | 4.04e-01 | 94.7% | 87.3% |
| 3lqcA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 3.17e-01 | 82.7% | 88.1% |
| 5u3fA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.51 | 43.0 | 3.33e-01 | 98.7% | 62.6% |
| 3snoA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.51 | 44.0 | 3.80e-01 | 100.0% | 78.2% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 43.0 | 3.95e-01 | 97.3% | 89.1% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 44.0 | 3.70e-01 | 96.0% | 81.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940784 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.85 | 80.0 | 6.11e-01 | 100.0% | 81.3% |
| 3280020 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.77 | 70.0 | 5.28e-01 | 100.0% | 81.1% |
| 7174 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.75 | 69.0 | 4.91e-01 | 100.0% | 66.7% |
| 5039858 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.73 | 67.0 | 5.15e-01 | 100.0% | 78.1% |
| 2721360 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.59 | 51.0 | 3.90e-01 | 100.0% | 82.7% |
| 7175 | 862.1.1.2 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 | 0.53 | 44.0 | 3.45e-01 | 94.7% | 90.3% |
| 3965044 | 4045.1.1.1 ↗ | a+b two layers › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.53 | 46.0 | 3.59e-01 | 100.0% | 64.1% |
| 4164884 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 36.0 | 2.60e-01 | 89.3% | 23.3% |
| 3994678 | 4045.1.1.1 ↗ | a+b two layers › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.51 | 44.0 | 3.31e-01 | 100.0% | 79.0% |
| 4158920 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.51 | 42.0 | 3.50e-01 | 92.0% | 60.7% |
| 3785041 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.51 | 34.0 | 3.38e-01 | 93.3% | 65.0% |
| 3650075 | 11.1.1.218 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SCAB-Ig | 0.51 | 42.0 | 3.91e-01 | 96.0% | 79.0% |
D2
medium
residues 103-163_185-214
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rniA02 | 3.30.2250.10 | Alpha Beta › 2-Layer Sandwich › Prim-pol fold › Bifunctional DNA primase/polymerase domain | 0.74 | 68.0 | 6.28e-01 | 100.0% | 87.0% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.68 | 59.0 | 4.20e-01 | 96.7% | 61.3% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.63 | 48.0 | 3.22e-01 | 82.4% | 74.8% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.58 | 37.0 | 3.93e-01 | 98.9% | 74.4% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.58 | 36.0 | 3.85e-01 | 97.8% | 71.2% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.22e-01 | 97.8% | 89.9% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 43.0 | 3.41e-01 | 80.2% | 86.0% |
| 1sjrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 43.0 | 4.07e-01 | 80.2% | 88.9% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.56 | 29.0 | 3.30e-01 | 80.2% | 64.3% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.56 | 36.0 | 3.96e-01 | 100.0% | 84.5% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.56 | 40.0 | 3.01e-01 | 75.8% | 47.9% |
| 2y1rK00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.97e-01 | 78.0% | 88.0% |
| 2i0kA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.54 | 39.0 | 2.87e-01 | 79.1% | 67.5% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 32.0 | 3.50e-01 | 85.7% | 73.3% |
| 4kgmA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.53 | 40.0 | 3.08e-01 | 82.4% | 90.4% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.96e-01 | 81.3% | 91.1% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 39.0 | 3.40e-01 | 82.4% | 100.0% |
| 2kcuA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 38.0 | 3.18e-01 | 79.1% | 71.7% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.50 | 33.0 | 3.65e-01 | 98.9% | 88.2% |
| 2cy2A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 29.0 | 2.43e-01 | 86.8% | 28.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960009 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.68 | 54.0 | 3.81e-01 | 85.7% | 56.8% |
| 4986859 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.67 | 57.0 | 4.00e-01 | 95.6% | 58.0% |
| 4574112 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.63 | 42.0 | 4.16e-01 | 98.9% | 64.2% |
| 3492512 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.59 | 49.0 | 3.45e-01 | 95.6% | 68.4% |
| 3403645 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.56 | 28.0 | 3.40e-01 | 80.2% | 71.7% |
| 4540762 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.55 | 40.0 | 3.87e-01 | 78.0% | 80.8% |
| 4350848 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.55 | 39.0 | 3.94e-01 | 76.9% | 89.5% |
| 4032691 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.54 | 39.0 | 3.93e-01 | 78.0% | 89.5% |
| 3629253 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.54 | 35.0 | 3.68e-01 | 79.1% | 72.3% |
| 3216407 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.54 | 36.0 | 3.86e-01 | 80.2% | 78.8% |
| 4212253 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.54 | 40.0 | 4.05e-01 | 81.3% | 91.4% |
| 3660054 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.54 | 34.0 | 3.43e-01 | 79.1% | 62.1% |
| 4993130 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 34.0 | 3.67e-01 | 100.0% | 77.3% |
| 4349415 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.53 | 40.0 | 4.03e-01 | 81.3% | 87.4% |
| 3243609 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.53 | 34.0 | 3.74e-01 | 79.1% | 80.0% |
| 3001000 | 304.6.1.2 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › ALO | 0.53 | 39.0 | 2.74e-01 | 79.1% | 60.2% |
| 3451493 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.53 | 34.0 | 3.39e-01 | 79.1% | 62.1% |
| 3796258 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.53 | 34.0 | 3.73e-01 | 79.1% | 80.0% |
| 3301484 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 40.0 | 3.67e-01 | 80.2% | 86.7% |
| 4552838 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.52 | 38.0 | 3.82e-01 | 78.0% | 90.3% |
| 4461334 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.50 | 38.0 | 3.84e-01 | 81.3% | 94.4% |