←Back to structures
IMGVR_UViG_3300005835_000032-3300005835-Ga0078910_1024636
Arc-VirIMGVR_UViG_3300005835_000032-3300005835-Ga0078910_1024636
Identity
- Kingdom:
- archaea
Quality
79.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-66
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.79 | 68.0 | 6.45e-01 | 100.0% | 80.3% |
| 3cjhB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.75 | 55.0 | 5.65e-01 | 80.3% | 83.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.73 | 58.0 | 5.36e-01 | 95.1% | 66.7% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.73 | 55.0 | 5.48e-01 | 83.6% | 80.0% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.69 | 60.0 | 5.41e-01 | 100.0% | 72.9% |
| 1jb0K00 | 1.20.860.20 | Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre | 0.69 | 49.0 | 5.45e-01 | 75.4% | 100.0% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.67 | 54.0 | 4.91e-01 | 96.7% | 65.5% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 57.0 | 3.77e-01 | 100.0% | 87.6% |
| 7tchB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 52.0 | 3.50e-01 | 86.9% | 24.8% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 53.0 | 4.57e-01 | 96.7% | 56.1% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 58.0 | 4.40e-01 | 100.0% | 67.6% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.65 | 51.0 | 4.83e-01 | 85.2% | 97.3% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 49.0 | 3.74e-01 | 82.0% | 45.7% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.64 | 53.0 | 3.46e-01 | 100.0% | 28.4% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 47.0 | 4.58e-01 | 85.2% | 73.2% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 42.0 | 3.89e-01 | 73.8% | 88.3% |
| 4cgrB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 46.0 | 3.29e-01 | 85.2% | 27.2% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.58 | 41.0 | 3.60e-01 | 75.4% | 59.4% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 51.0 | 4.00e-01 | 100.0% | 97.0% |
| 2wh5A00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.57 | 49.0 | 4.35e-01 | 96.7% | 95.6% |
| 7w01A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 3.36e-01 | 98.4% | 40.0% |
| 5cemA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.55 | 42.0 | 3.12e-01 | 95.1% | 29.1% |
| 2f2bA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.55 | 45.0 | 2.98e-01 | 88.5% | 24.5% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 48.0 | 3.76e-01 | 98.4% | 85.7% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.55 | 41.0 | 4.12e-01 | 80.3% | 77.4% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 42.0 | 3.41e-01 | 82.0% | 47.3% |
| 2gbbB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.54 | 42.0 | 3.17e-01 | 85.2% | 51.6% |
| 3k1tA02 | 3.40.50.11280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutamate-cysteine ligase, N-terminal domain | 0.53 | 36.0 | 2.84e-01 | 70.5% | 92.8% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.53 | 42.0 | 2.96e-01 | 90.2% | 49.3% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.52 | 42.0 | 4.14e-01 | 98.4% | 87.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981876 | 6076.1.1.0 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme | 0.83 | 58.0 | 5.55e-01 | 77.0% | 64.3% |
| 3704855 | 2003.1.9.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB | 0.82 | 64.0 | 4.12e-01 | 82.0% | 20.4% |
| 3206612 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.82 | 57.0 | 5.13e-01 | 72.1% | 56.2% |
| 5010630 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.78 | 55.0 | 5.37e-01 | 82.0% | 69.2% |
| 3285523 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 46.0 | 4.69e-01 | 77.0% | 66.7% |
| 3347927 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.70 | 53.0 | 3.46e-01 | 83.6% | 19.6% |
| 3245707 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.69 | 52.0 | 4.73e-01 | 83.6% | 60.0% |
| 3190824 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.68 | 61.0 | 5.68e-01 | 100.0% | 88.0% |
| 4876272 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.67 | 58.0 | 5.02e-01 | 100.0% | 61.9% |
| 3230949 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.67 | 51.0 | 4.87e-01 | 85.2% | 72.0% |
| 4272325 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.66 | 58.0 | 4.01e-01 | 100.0% | 29.0% |
| 3588334 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 47.0 | 3.87e-01 | 88.5% | 43.2% |
| 2972075 | 3759.1.1.1 ↗ | alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm | 0.61 | 46.0 | 4.47e-01 | 85.2% | 77.5% |
| 331637 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.58 | 50.0 | 3.24e-01 | 100.0% | 95.1% |
| 3599060 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.57 | 41.0 | 2.90e-01 | 77.0% | 70.0% |
| 3600240 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 44.0 | 3.07e-01 | 98.4% | 36.7% |
| 3703368 | 109.4.1.563 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3437 | 0.54 | 45.0 | 2.90e-01 | 90.2% | 27.9% |
| 3289996 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 47.0 | 3.69e-01 | 100.0% | 58.5% |
| 3704236 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.53 | 42.0 | 2.91e-01 | 98.4% | 32.7% |
| 3614579 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 43.0 | 2.91e-01 | 98.4% | 31.3% |
| 3636049 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 40.0 | 3.01e-01 | 90.2% | 77.6% |
| 4946914 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.50 | 44.0 | 3.33e-01 | 98.4% | 49.7% |