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IMGVR_UViG_3300005835_000048-3300005835-Ga0078910_1025746

Arc-Vir

IMGVR_UViG_3300005835_000048-3300005835-Ga0078910_1025746

Identity

Kingdom:
archaea

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-75
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.80 42.0 3.67e-01 77.6% 36.1%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 53.0 5.10e-01 77.6% 73.3%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 43.0 4.19e-01 97.0% 54.7%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.68 50.0 4.42e-01 77.6% 56.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.66 52.0 4.50e-01 85.1% 63.7%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 45.0 3.61e-01 85.1% 41.4%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.59 40.0 4.06e-01 73.1% 70.6%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.59 40.0 3.95e-01 74.6% 65.8%
1ashA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 38.0 2.96e-01 70.1% 94.6%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.53 41.0 3.86e-01 82.1% 74.1%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 43.0 3.44e-01 92.5% 61.6%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 40.0 3.09e-01 79.1% 42.5%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 38.0 3.06e-01 76.1% 45.7%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 43.0 3.88e-01 92.5% 91.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251428 3919.1.1.4 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD1_N 0.83 62.0 5.17e-01 79.1% 56.4%
3660212 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 51.0 4.71e-01 71.6% 61.2%
3605868 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.73 49.0 4.16e-01 88.1% 42.7%
3590474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 53.0 4.90e-01 77.6% 65.9%
3941666 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 49.0 4.75e-01 71.6% 68.9%
4988487 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.70 48.0 4.62e-01 86.6% 62.0%
3709674 101.1.1.50 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.68 51.0 4.94e-01 79.1% 77.3%
3491521 101.1.2.475 ↗ alpha arrays › HTH › HTH › winged helix domain › FIBP 0.67 49.0 3.47e-01 79.1% 26.7%
4444459 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.67 48.0 3.22e-01 77.6% 19.0%
3599587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 44.0 3.29e-01 79.1% 27.6%
4964045 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.62 42.0 3.95e-01 73.1% 55.3%
3680153 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.62 48.0 4.30e-01 86.6% 60.0%
3636033 192.15.1.101 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Choline_transpo 0.62 54.0 3.30e-01 100.0% 84.8%
3939164 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.62 53.0 3.51e-01 100.0% 69.0%
3691737 5076.2.1.9 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.61 52.0 3.26e-01 100.0% 84.6%
3273218 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.61 43.0 3.88e-01 76.1% 100.0%
3517407 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 32.0 3.21e-01 74.6% 50.0%
3524685 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 48.0 3.77e-01 100.0% 63.2%
4184406 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.54 46.0 3.18e-01 100.0% 36.9%
3828844 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.51 39.0 3.17e-01 88.1% 47.0%