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IMGVR_UViG_3300005835_000054-3300005835-Ga0078910_1026211
Arc-VirIMGVR_UViG_3300005835_000054-3300005835-Ga0078910_1026211
Identity
- Kingdom:
- archaea
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-40
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bamA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.69 | 59.0 | 3.74e-01 | 100.0% | 23.3% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.69 | 57.0 | 3.66e-01 | 100.0% | 44.3% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 42.0 | 2.85e-01 | 87.2% | 16.9% |
| 2cxcA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 48.0 | 4.32e-01 | 100.0% | 78.3% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 51.0 | 3.37e-01 | 100.0% | 83.2% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.62 | 49.0 | 3.70e-01 | 100.0% | 44.5% |
| 2fqmA01 | 6.10.140.830 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 44.0 | 4.34e-01 | 87.2% | 87.0% |
| 2p3yA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 37.0 | 4.08e-01 | 92.3% | 66.7% |
| 2gruA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 47.0 | 3.20e-01 | 97.4% | 96.5% |
| 4inoA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.59 | 41.0 | 2.97e-01 | 82.1% | 69.1% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 42.0 | 3.56e-01 | 94.9% | 42.4% |
| 3nemA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 49.0 | 3.61e-01 | 100.0% | 57.1% |
| 4i14A02 | 3.40.50.10990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II | 0.57 | 41.0 | 3.03e-01 | 84.6% | 78.6% |
| 4qtpD00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.57 | 45.0 | 3.38e-01 | 100.0% | 75.7% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 46.0 | 3.68e-01 | 100.0% | 51.1% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.56 | 42.0 | 3.88e-01 | 100.0% | 61.3% |
| 4xk2B00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.55 | 39.0 | 2.36e-01 | 76.9% | 16.5% |
| 8gsxA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.07e-01 | 100.0% | 96.0% |
| 2m4iA01 | 3.30.160.540 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 43.0 | 3.60e-01 | 100.0% | 97.5% |
| 5buvB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 44.0 | 2.96e-01 | 97.4% | 63.6% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 41.0 | 2.92e-01 | 100.0% | 35.8% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.67e-01 | 97.4% | 62.1% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 40.0 | 2.67e-01 | 97.4% | 69.2% |
| 1o7iB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 43.0 | 3.18e-01 | 100.0% | 43.9% |
| 1hf2A01 | 3.30.750.50 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Cell-division inhibitor MinC, N-terminal domain | 0.53 | 40.0 | 3.32e-01 | 100.0% | 86.7% |
| 3tefA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 41.0 | 2.86e-01 | 100.0% | 46.9% |
| 2h84A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 42.0 | 2.97e-01 | 100.0% | 39.9% |
| 3oxnA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 38.0 | 3.02e-01 | 100.0% | 42.6% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.52 | 40.0 | 2.86e-01 | 92.3% | 46.4% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 35.0 | 2.45e-01 | 82.1% | 38.2% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 37.0 | 2.83e-01 | 89.7% | 94.0% |
| 7yj5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 33.0 | 2.42e-01 | 71.8% | 22.6% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4987428 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.73 | 46.0 | 2.99e-01 | 87.2% | 15.2% |
| 4945678 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.72 | 59.0 | 4.98e-01 | 97.4% | 75.7% |
| 4935934 | 327.11.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd | 0.71 | 59.0 | 4.94e-01 | 97.4% | 75.7% |
| 3496374 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.68 | 54.0 | 4.31e-01 | 100.0% | 52.6% |
| 4431536 | 2007.1.7.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase | 0.67 | 52.0 | 3.57e-01 | 100.0% | 97.1% |
| 5050086 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.66 | 54.0 | 4.65e-01 | 100.0% | 70.0% |
| 5068219 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.66 | 57.0 | 4.99e-01 | 100.0% | 78.3% |
| 4930883 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.66 | 53.0 | 4.00e-01 | 100.0% | 46.9% |
| 4973015 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.66 | 54.0 | 3.96e-01 | 100.0% | 35.8% |
| 5022749 | 327.1.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain | 0.64 | 51.0 | 4.54e-01 | 100.0% | 64.6% |
| 3368713 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.64 | 48.0 | 3.96e-01 | 84.6% | 46.7% |
| 2323881 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.64 | 45.0 | 4.24e-01 | 89.7% | 59.3% |
| 3263231 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.64 | 51.0 | 3.22e-01 | 100.0% | 26.8% |
| 4998682 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.62 | 46.0 | 2.88e-01 | 92.3% | 56.1% |
| 3798470 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.62 | 53.0 | 3.17e-01 | 100.0% | 23.2% |
| 3932224 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 45.0 | 2.74e-01 | 87.2% | 36.8% |
| 3787266 | 7568.1.1.7 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › RTT107_BRCT_6 | 0.61 | 49.0 | 3.78e-01 | 100.0% | 88.0% |
| 3178317 | 327.5.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like | 0.61 | 48.0 | 3.49e-01 | 100.0% | 40.0% |
| 3415300 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.60 | 46.0 | 2.58e-01 | 97.4% | 20.7% |
| 4628389 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.60 | 48.0 | 3.57e-01 | 100.0% | 44.2% |
| 4874840 | 704.1.1.1 ↗ | beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap | 0.60 | 44.0 | 3.60e-01 | 87.2% | 61.6% |
| 3423942 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.60 | 45.0 | 3.78e-01 | 87.2% | 46.7% |
| 3960855 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 53.0 | 4.58e-01 | 100.0% | 88.3% |
| 3844858 | 220.1.1.39 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C | 0.59 | 46.0 | 3.15e-01 | 87.2% | 67.5% |
| 4974299 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.59 | 46.0 | 4.33e-01 | 100.0% | 87.3% |
| 2636517 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.59 | 48.0 | 4.01e-01 | 100.0% | 59.2% |
| 5030079 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.59 | 41.0 | 2.31e-01 | 74.4% | 20.4% |
| 2640297 | 808.1.1.1 ↗ | a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap | 0.58 | 43.0 | 3.22e-01 | 87.2% | 45.7% |
| 3413368 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.58 | 48.0 | 2.96e-01 | 100.0% | 54.3% |
| 5061797 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.58 | 38.0 | 3.86e-01 | 97.4% | 67.5% |
| 3170653 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.57 | 43.0 | 2.89e-01 | 89.7% | 97.9% |
| 3562710 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.57 | 48.0 | 2.80e-01 | 100.0% | 33.1% |
| 5039829 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.57 | 45.0 | 2.85e-01 | 97.4% | 97.4% |
| 5031481 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 43.0 | 3.34e-01 | 94.9% | 90.9% |
| 3667031 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 42.0 | 3.61e-01 | 89.7% | 48.0% |
| 5017728 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.57 | 45.0 | 3.41e-01 | 100.0% | 77.0% |
| 3576635 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 40.0 | 2.70e-01 | 87.2% | 55.5% |
| 4070661 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 39.0 | 3.59e-01 | 87.2% | 53.8% |
| 4955040 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 47.0 | 3.80e-01 | 100.0% | 70.0% |
| 4110276 | 1.1.3.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › SymE_toxin | 0.55 | 39.0 | 3.24e-01 | 74.4% | 41.4% |
| 3915992 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 42.0 | 2.48e-01 | 100.0% | 30.6% |
| 1879221 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 41.0 | 3.73e-01 | 84.6% | 58.3% |
| 4979123 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.54 | 40.0 | 2.68e-01 | 89.7% | 17.8% |
| 4116610 | 243.3.1.52 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 | 0.54 | 40.0 | 3.14e-01 | 100.0% | 32.2% |
| 3600951 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 40.0 | 2.45e-01 | 97.4% | 18.4% |
| 5011586 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.53 | 44.0 | 3.20e-01 | 100.0% | 36.0% |
| 3506709 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.53 | 42.0 | 3.15e-01 | 94.9% | 52.7% |
| 5036602 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.53 | 38.0 | 3.28e-01 | 94.9% | 61.2% |
| 11458 | 2495.1.1.1 ↗ | a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N | 0.53 | 40.0 | 3.33e-01 | 100.0% | 87.6% |
| 4989479 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.52 | 38.0 | 3.02e-01 | 94.9% | 88.2% |
| 5058520 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.51 | 42.0 | 3.18e-01 | 100.0% | 88.2% |
| 5058377 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.51 | 39.0 | 3.08e-01 | 100.0% | 89.1% |
| 5016890 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.51 | 38.0 | 3.03e-01 | 94.9% | 93.6% |
| 3941210 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.51 | 37.0 | 3.11e-01 | 100.0% | 72.6% |
| 3933890 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.50 | 36.0 | 3.02e-01 | 100.0% | 74.0% |