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IMGVR_UViG_3300005838_000118-3300005838-Ga0008649_100019876

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300005838_000118-3300005838-Ga0008649_100019876 ↗
Kingdom:: archaea

Quality

62.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 123-187

PDB

D2 medium residues 188-252_452-527

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3luqB00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.54	25.0	2.79e-01	71.6%	50.0%
1se8A02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	26.0	2.87e-01	79.4%	53.2%
4k7rA02	2.20.200.10	Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.53	28.0	3.71e-01	80.1%	93.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2494924	295.1.1.4 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain	0.60	28.0	3.64e-01	76.6%	78.2%
2659065	265.1.1.3 ↗	a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat	0.58	34.0	3.95e-01	87.2%	80.2%
3201142	223.2.1.25 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9	0.57	31.0	3.41e-01	80.9%	64.3%
3782159	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.52	27.0	3.19e-01	78.7%	70.5%
3796739	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.52	27.0	3.40e-01	76.6%	85.0%

D3 medium residues 253-451

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4zgnB00	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.61	31.0	4.30e-01	81.9%	96.1%
3oz2A02	3.30.9.10	Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2	0.60	30.0	3.35e-01	96.0%	58.7%
1x5fA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	30.0	3.72e-01	70.4%	85.0%
2yweA04	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	31.0	3.94e-01	96.0%	96.5%
3ihmA02	3.30.9.40	Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 ›	0.52	30.0	3.45e-01	83.9%	76.4%
2cdoA00	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.51	25.0	2.90e-01	95.0%	61.6%
2pn5A10	2.60.40.690	Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain	0.50	25.0	2.85e-01	96.0%	60.3%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3963908	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.72	28.0	4.62e-01	93.0%	100.0%
5038126	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.70	27.0	4.33e-01	82.4%	93.3%
4254437	1.1.8.5 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C	0.68	30.0	4.62e-01	80.4%	98.8%
5051090	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.65	29.0	4.35e-01	71.9%	100.0%
4429352	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.61	29.0	4.24e-01	72.9%	100.0%
1171020	1.1.8.4 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C	0.61	28.0	4.13e-01	78.9%	93.8%
3287262	1.1.7.7 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6	0.60	31.0	4.26e-01	71.9%	95.2%
5034034	244.1.1.16 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GGR_cat	0.58	29.0	4.16e-01	84.4%	100.0%
3282998	244.1.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C	0.58	28.0	4.03e-01	95.0%	100.0%
4939996	1.1.7.46 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B	0.58	31.0	4.28e-01	71.4%	100.0%
4486447	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.57	34.0	2.57e-01	96.0%	23.5%
4627066	1.1.7.44 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift	0.57	34.0	4.32e-01	73.9%	100.0%
3939231	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	28.0	3.80e-01	74.9%	88.6%
1851176	5092.1.1.0 ↗	beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins	0.55	29.0	3.45e-01	70.4%	72.1%
5037360	10.20.1.0 ↗	beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease	0.54	26.0	3.29e-01	95.0%	75.7%

D4 medium residues 528-591

PDB

D5 medium residues 845-918

PDB

D6 medium residues 919-994_1034-1081

PDB

D7 medium residues 1082-1150

PDB