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IMGVR_UViG_3300005838_000692-3300005838-Ga0008649_100137407
Arc-VirIMGVR_UViG_3300005838_000692-3300005838-Ga0008649_100137407
Identity
- Kingdom:
- archaea
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 52-134
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.72 | 49.0 | 3.33e-01 | 71.1% | 48.7% |
| 1t90A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.71 | 50.0 | 3.41e-01 | 72.3% | 50.7% |
| 3b89A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 42.0 | 4.93e-01 | 89.2% | 94.4% |
| 4r8zA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.68 | 56.0 | 4.11e-01 | 89.2% | 75.7% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 35.0 | 3.40e-01 | 100.0% | 45.6% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 50.0 | 4.57e-01 | 100.0% | 60.7% |
| 2b9rA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 52.0 | 4.26e-01 | 83.1% | 77.9% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 44.0 | 3.15e-01 | 71.1% | 56.5% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 55.0 | 4.70e-01 | 94.0% | 86.4% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 52.0 | 5.31e-01 | 97.6% | 91.3% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 47.0 | 4.50e-01 | 84.3% | 96.0% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.61 | 55.0 | 4.76e-01 | 100.0% | 71.5% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.61 | 55.0 | 4.32e-01 | 100.0% | 77.5% |
| 7f16R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 49.0 | 3.35e-01 | 86.7% | 31.4% |
| 1t11A02 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.59 | 51.0 | 4.09e-01 | 96.4% | 91.6% |
| 5d18A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 51.0 | 3.90e-01 | 100.0% | 40.6% |
| 1wmwB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 47.0 | 3.26e-01 | 90.4% | 55.2% |
| 5fglA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 51.0 | 3.88e-01 | 100.0% | 43.5% |
| 3psfA02 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.58 | 45.0 | 3.79e-01 | 84.3% | 87.5% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 47.0 | 4.18e-01 | 92.8% | 62.6% |
| 1lhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 51.0 | 3.44e-01 | 100.0% | 26.8% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 48.0 | 4.09e-01 | 98.8% | 79.5% |
| 7sf7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 43.0 | 3.06e-01 | 85.5% | 32.5% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.55 | 46.0 | 3.99e-01 | 92.8% | 64.6% |
| 3vvmA02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.55 | 47.0 | 4.44e-01 | 96.4% | 87.3% |
| 1fnnA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 39.0 | 3.72e-01 | 91.6% | 63.4% |
| 4bg5B00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.54 | 47.0 | 3.63e-01 | 100.0% | 44.7% |
| 2xgjA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.54 | 42.0 | 3.14e-01 | 95.2% | 33.0% |
| 2b61A02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 46.0 | 4.29e-01 | 98.8% | 89.4% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 45.0 | 4.18e-01 | 95.2% | 88.0% |
| 3s95A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 45.0 | 3.49e-01 | 100.0% | 52.5% |
| 6o7uc01 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.52 | 43.0 | 3.35e-01 | 91.6% | 72.1% |
| 3rvyA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 38.0 | 3.56e-01 | 78.3% | 86.0% |
| 2l10A00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.51 | 39.0 | 3.17e-01 | 80.7% | 87.3% |
| 3rguB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 40.0 | 4.02e-01 | 84.3% | 86.2% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 39.0 | 3.73e-01 | 85.5% | 99.0% |
| 8f2lE01 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.51 | 43.0 | 4.07e-01 | 95.2% | 89.9% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.50 | 43.0 | 3.85e-01 | 96.4% | 81.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3425446 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.70 | 59.0 | 5.86e-01 | 97.6% | 90.6% |
| 3724158 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.67 | 44.0 | 4.17e-01 | 77.1% | 56.0% |
| 3788414 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.67 | 59.0 | 5.77e-01 | 100.0% | 93.3% |
| 3940544 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 58.0 | 5.32e-01 | 98.8% | 76.2% |
| 3291384 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.65 | 55.0 | 4.81e-01 | 100.0% | 61.6% |
| 3598088 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 54.0 | 4.65e-01 | 92.8% | 84.6% |
| 4113903 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.63 | 53.0 | 4.61e-01 | 96.4% | 59.4% |
| 3669993 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.62 | 55.0 | 5.51e-01 | 100.0% | 98.8% |
| 4452686 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.61 | 54.0 | 4.49e-01 | 98.8% | 55.3% |
| 4927740 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 50.0 | 4.33e-01 | 89.2% | 87.7% |
| 3626373 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 47.0 | 4.57e-01 | 84.3% | 97.9% |
| 3221336 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.58 | 54.0 | 3.84e-01 | 98.8% | 60.7% |
| 3431012 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.58 | 45.0 | 4.30e-01 | 85.5% | 99.0% |
| 3807233 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.58 | 52.0 | 4.17e-01 | 97.6% | 63.9% |
| 3703267 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 50.0 | 4.52e-01 | 100.0% | 95.0% |
| 2397 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.58 | 45.0 | 3.99e-01 | 86.7% | 85.3% |
| 4024734 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 51.0 | 3.96e-01 | 95.2% | 57.0% |
| 4225289 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.57 | 49.0 | 4.45e-01 | 97.6% | 76.5% |
| 3358229 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.56 | 44.0 | 4.03e-01 | 88.0% | 90.4% |
| 4946771 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 48.0 | 3.62e-01 | 97.6% | 96.7% |
| 3650365 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 44.0 | 4.29e-01 | 88.0% | 100.0% |
| 3969010 | 129.1.1.29 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › BTP | 0.55 | 48.0 | 4.03e-01 | 96.4% | 65.7% |
| 3358147 | 220.1.1.241 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 | 0.55 | 40.0 | 2.90e-01 | 90.4% | 26.0% |
| 3896686 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.54 | 47.0 | 4.50e-01 | 100.0% | 100.0% |
| 4876244 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 47.0 | 3.90e-01 | 95.2% | 63.2% |
| 3412019 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.54 | 43.0 | 4.18e-01 | 84.3% | 92.2% |
| 5077194 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.54 | 45.0 | 3.98e-01 | 91.6% | 68.9% |
| 4878415 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 43.0 | 3.41e-01 | 92.8% | 54.7% |
| 3224085 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.52 | 43.0 | 2.95e-01 | 90.4% | 47.8% |
| 3904873 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.51 | 45.0 | 3.14e-01 | 100.0% | 42.9% |
| 4871311 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 44.0 | 3.81e-01 | 95.2% | 93.0% |