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IMGVR_UViG_3300005856_000098-3300005856-Ga0080005_12956220
Arc-VirIMGVR_UViG_3300005856_000098-3300005856-Ga0080005_12956220
Identity
- Kingdom:
- archaea
Quality
68.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-75
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pyoC00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.82 | 61.0 | 4.53e-01 | 79.1% | 68.3% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.78 | 60.0 | 5.15e-01 | 80.6% | 81.2% |
| 5ce6A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.78 | 68.0 | 5.15e-01 | 100.0% | 56.7% |
| 3netB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.76 | 55.0 | 4.83e-01 | 76.1% | 74.5% |
| 4hh3C02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.75 | 56.0 | 4.42e-01 | 77.6% | 40.9% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.74 | 54.0 | 4.78e-01 | 77.6% | 76.3% |
| 3hriA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.74 | 55.0 | 5.04e-01 | 79.1% | 85.1% |
| 3ngxA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.73 | 54.0 | 5.04e-01 | 79.1% | 70.2% |
| 1xknA00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.73 | 64.0 | 4.06e-01 | 100.0% | 88.1% |
| 3lteD00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.72 | 55.0 | 4.45e-01 | 80.6% | 61.0% |
| 3jvdB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.71 | 52.0 | 4.30e-01 | 79.1% | 45.9% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 51.0 | 3.74e-01 | 77.6% | 55.0% |
| 3hs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 50.0 | 4.16e-01 | 79.1% | 47.6% |
| 5iz4A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 61.0 | 4.17e-01 | 100.0% | 52.6% |
| 6wqbA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.67 | 48.0 | 3.85e-01 | 77.6% | 49.3% |
| 7b3aA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 49.0 | 3.84e-01 | 82.1% | 55.7% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.65 | 56.0 | 4.35e-01 | 98.5% | 82.9% |
| 6m37B01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.65 | 46.0 | 4.07e-01 | 74.6% | 79.6% |
| 3pamB00 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.64 | 50.0 | 3.41e-01 | 86.6% | 67.2% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 52.0 | 4.86e-01 | 94.0% | 97.7% |
| 1f06A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.63 | 53.0 | 4.31e-01 | 100.0% | 68.8% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 46.0 | 3.60e-01 | 80.6% | 47.1% |
| 4c6sA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.62 | 53.0 | 4.23e-01 | 100.0% | 97.2% |
| 4mzyA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 47.0 | 3.57e-01 | 86.6% | 67.3% |
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.58 | 44.0 | 4.46e-01 | 83.6% | 88.2% |
| 4q5tA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 42.0 | 3.42e-01 | 80.6% | 74.8% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 3.80e-01 | 100.0% | 55.5% |
| 2aznA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.58 | 49.0 | 3.52e-01 | 100.0% | 45.2% |
| 7yq0B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 52.0 | 3.84e-01 | 98.5% | 42.8% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.57 | 46.0 | 3.96e-01 | 88.1% | 62.6% |
| 4hn9A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 47.0 | 3.95e-01 | 100.0% | 82.3% |
| 2yv9A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 41.0 | 3.53e-01 | 79.1% | 66.4% |
| 5i45A00 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 46.0 | 3.46e-01 | 100.0% | 73.8% |
| 4c0rA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 43.0 | 3.82e-01 | 89.6% | 67.6% |
| 1s3zA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 44.0 | 3.49e-01 | 91.0% | 67.3% |
| 4jccA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 46.0 | 3.46e-01 | 100.0% | 50.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4342419 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.80 | 57.0 | 6.23e-01 | 74.6% | 92.7% |
| 4308313 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.80 | 61.0 | 3.69e-01 | 80.6% | 15.8% |
| 4456206 | 2007.1.7.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase | 0.79 | 59.0 | 4.32e-01 | 79.1% | 37.6% |
| 4376572 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.78 | 56.0 | 5.75e-01 | 79.1% | 78.5% |
| 4422881 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.77 | 56.0 | 4.85e-01 | 76.1% | 73.0% |
| 4128575 | 2007.1.6.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH | 0.77 | 57.0 | 5.00e-01 | 77.6% | 61.1% |
| 4990351 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.77 | 58.0 | 4.61e-01 | 80.6% | 61.5% |
| 4317320 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.76 | 55.0 | 4.82e-01 | 76.1% | 74.5% |
| 5011457 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.76 | 57.0 | 5.01e-01 | 79.1% | 81.1% |
| 5036878 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.75 | 56.0 | 4.70e-01 | 79.1% | 68.8% |
| 4477176 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.75 | 56.0 | 5.17e-01 | 79.1% | 81.2% |
| 4209926 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.75 | 56.0 | 4.93e-01 | 79.1% | 78.9% |
| 4886650 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.74 | 55.0 | 5.10e-01 | 79.1% | 81.2% |
| 4117853 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.73 | 55.0 | 5.76e-01 | 79.1% | 91.7% |
| 387657 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.72 | 55.0 | 4.46e-01 | 80.6% | 61.5% |
| 3943667 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.71 | 53.0 | 4.50e-01 | 79.1% | 52.7% |
| 4033614 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.71 | 53.0 | 3.63e-01 | 77.6% | 66.0% |
| 5072638 | 7569.1.1.2 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › DUF5591 | 0.71 | 62.0 | 4.69e-01 | 98.5% | 65.6% |
| 3165868 | 2003.1.1.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored | 0.71 | 63.0 | 4.63e-01 | 100.0% | 45.7% |
| 3921486 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.67 | 57.0 | 3.91e-01 | 100.0% | 94.1% |
| 3420720 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.64 | 55.0 | 3.30e-01 | 100.0% | 16.5% |
| 4666099 | 7509.1.1.0 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like | 0.63 | 47.0 | 4.04e-01 | 79.1% | 95.2% |
| 3493207 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.62 | 50.0 | 4.62e-01 | 91.0% | 93.3% |
| 4157322 | 7523.1.1.4 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 | 0.62 | 45.0 | 3.46e-01 | 80.6% | 80.0% |
| 5000538 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.60 | 50.0 | 4.17e-01 | 100.0% | 60.2% |
| 3280738 | 2007.1.4.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain | 0.60 | 50.0 | 4.56e-01 | 97.0% | 90.5% |
| 3320664 | 2003.1.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 50.0 | 3.48e-01 | 98.5% | 81.2% |
| 1267700 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.59 | 47.0 | 3.85e-01 | 91.0% | 70.1% |
| 5903 | 327.8.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › GSPE_N1E | 0.58 | 44.0 | 4.46e-01 | 83.6% | 88.2% |
| 4994961 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.58 | 46.0 | 4.22e-01 | 89.6% | 73.3% |
| 3638893 | 4320.1.1.1 ↗ | alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 | 0.54 | 45.0 | 3.26e-01 | 94.0% | 85.1% |
| 4956037 | 2006.1.1.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B | 0.53 | 45.0 | 3.52e-01 | 100.0% | 91.3% |
| 3969775 | 327.8.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › GSPE_N1E | 0.52 | 40.0 | 4.07e-01 | 85.1% | 90.8% |
| 5073839 | 2008.5.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C | 0.51 | 44.0 | 3.57e-01 | 98.5% | 72.6% |
| 3928405 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 3.67e-01 | 94.0% | 85.7% |