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IMGVR_UViG_3300005860_000189-3300005860-Ga0080004_11127773
Arc-VirIMGVR_UViG_3300005860_000189-3300005860-Ga0080004_11127773
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 19-122_219-231
Domain cluster:
rep: MW584195.1__QSM04178.1__PROPHIGD51-2_40__00040__D376-428_443-519_647-661
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 30.0 | 7.30e-07 | 91.5% | 47.3% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vecA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 41.0 | 4.41e-01 | 100.0% | 69.9% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 39.0 | 4.07e-01 | 100.0% | 63.0% |
| 3aclA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 40.0 | 4.07e-01 | 100.0% | 62.7% |
| 3cq9A00 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.64 | 41.0 | 3.33e-01 | 100.0% | 37.1% |
| 3ihkA00 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.62 | 33.0 | 2.69e-01 | 100.0% | 28.5% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 38.0 | 4.28e-01 | 100.0% | 84.1% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 38.0 | 4.03e-01 | 100.0% | 72.8% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 33.0 | 3.48e-01 | 100.0% | 60.4% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 35.0 | 3.79e-01 | 94.0% | 73.1% |
| 1v70A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 37.0 | 3.86e-01 | 100.0% | 71.4% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.56 | 39.0 | 4.18e-01 | 100.0% | 84.7% |
| 3qs2A00 | 2.60.40.3290 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA | 0.55 | 49.0 | 4.33e-01 | 100.0% | 98.3% |
| 3k94A00 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.55 | 38.0 | 3.06e-01 | 100.0% | 38.8% |
| 5lz6A00 | 2.60.120.680 | Mainly Beta › Sandwich › Jelly Rolls › GOLD domain | 0.54 | 43.0 | 4.27e-01 | 99.1% | 79.4% |
| 4d8mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 40.0 | 3.52e-01 | 100.0% | 53.5% |
| 4myjA04 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 29.0 | 2.82e-01 | 100.0% | 44.2% |
| 1omiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 31.0 | 3.26e-01 | 100.0% | 61.9% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 34.0 | 3.37e-01 | 93.2% | 60.7% |
| 1g0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 4.21e-01 | 99.1% | 87.3% |
| 1pgsA02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 48.0 | 4.15e-01 | 100.0% | 90.9% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.52 | 45.0 | 3.17e-01 | 100.0% | 96.3% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 32.0 | 2.94e-01 | 92.3% | 45.9% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 47.0 | 4.06e-01 | 100.0% | 98.3% |
| 1nziA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.51 | 44.0 | 4.52e-01 | 100.0% | 95.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3413879 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.64 | 37.0 | 3.88e-01 | 100.0% | 61.9% |
| 3486965 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 36.0 | 3.31e-01 | 100.0% | 43.3% |
| 5046630 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 39.0 | 3.98e-01 | 100.0% | 67.8% |
| 3934762 | 10.32.1.258 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_IRG7_N | 0.59 | 45.0 | 4.88e-01 | 100.0% | 94.0% |
| 3228358 | 10.32.1.258 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_IRG7_N | 0.58 | 44.0 | 4.87e-01 | 100.0% | 97.9% |
| 5048013 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 36.0 | 3.94e-01 | 100.0% | 77.9% |
| 4948691 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 45.0 | 4.81e-01 | 100.0% | 96.0% |
| 4202051 | 10.32.1.271 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27237 | 0.57 | 36.0 | 3.97e-01 | 100.0% | 81.1% |
| 5005599 | 10.1.2.201 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PF27237 | 0.57 | 36.0 | 3.97e-01 | 100.0% | 81.1% |
| 5077191 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 46.0 | 4.92e-01 | 100.0% | 99.0% |
| 4971701 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 44.0 | 4.79e-01 | 100.0% | 96.0% |
| 3967122 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 36.0 | 3.61e-01 | 100.0% | 62.7% |
| 3227067 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 4.72e-01 | 100.0% | 92.4% |
| 3642389 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.56 | 44.0 | 4.62e-01 | 96.6% | 91.4% |
| 3788037 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.56 | 36.0 | 3.76e-01 | 100.0% | 70.0% |
| 4928383 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 40.0 | 4.51e-01 | 100.0% | 97.8% |
| 3228364 | 2006.1.6.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 | 0.55 | 42.0 | 2.84e-01 | 100.0% | 21.9% |
| 5040182 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 47.0 | 4.85e-01 | 100.0% | 95.5% |
| 5045833 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 36.0 | 3.78e-01 | 100.0% | 73.3% |
| 4014484 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 43.0 | 4.61e-01 | 100.0% | 96.0% |
| 5044901 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 43.0 | 4.34e-01 | 100.0% | 83.5% |
| 5047474 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 41.0 | 4.52e-01 | 98.3% | 96.8% |
| 3341432 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.55 | 43.0 | 4.03e-01 | 98.3% | 67.6% |
| 3933157 | 11.1.1.1085 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_IRG7_N | 0.54 | 42.0 | 4.49e-01 | 100.0% | 96.0% |
| 3924594 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.54 | 41.0 | 4.51e-01 | 98.3% | 98.9% |
| 3214876 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 4.51e-01 | 100.0% | 96.0% |
| 3411291 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 44.0 | 4.67e-01 | 100.0% | 96.2% |
| 4929792 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 41.0 | 4.46e-01 | 100.0% | 95.0% |
| 3939806 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 42.0 | 3.73e-01 | 100.0% | 60.0% |
| 3938151 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 42.0 | 4.32e-01 | 100.0% | 88.2% |
| 3280259 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 4.05e-01 | 99.1% | 97.6% |
| 4029373 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 48.0 | 4.19e-01 | 99.1% | 87.3% |
| 5044775 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 42.0 | 4.43e-01 | 100.0% | 94.3% |
| 5002193 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 35.0 | 3.68e-01 | 100.0% | 73.6% |
| 5039646 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 44.0 | 4.45e-01 | 99.1% | 89.2% |
| 4955989 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 40.0 | 4.32e-01 | 100.0% | 100.0% |
| 3936620 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 41.0 | 4.21e-01 | 100.0% | 88.2% |
| 5083968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 46.0 | 4.52e-01 | 98.3% | 100.0% |
| 3624991 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 39.0 | 4.10e-01 | 98.3% | 88.6% |
| 3290668 | 3370.1.1.0 ↗ | beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 | 0.51 | 34.0 | 3.89e-01 | 100.0% | 100.0% |
| 4351615 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 40.0 | 4.34e-01 | 100.0% | 100.0% |
| 4531272 | 10.32.1.177 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 | 0.51 | 39.0 | 4.02e-01 | 100.0% | 83.5% |
| 3519988 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 40.0 | 4.19e-01 | 100.0% | 90.0% |
| 3923663 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.51 | 41.0 | 3.77e-01 | 100.0% | 67.1% |
| 4999199 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 41.0 | 4.38e-01 | 99.1% | 100.0% |
| 3620798 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.68e-01 | 100.0% | 82.0% |
| 3508967 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 41.0 | 4.28e-01 | 99.1% | 93.6% |
| 3929714 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.50 | 39.0 | 3.88e-01 | 100.0% | 77.6% |
D2
medium
residues 166-218